Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09621 ATGATTCAACCACTCACAATATTTCATATCATTGTTTTAATAATATCTCCTTCACTGGCCTCGGCACAAGAAGATGGAATAGTTTCAGTCCCTTTCCCATTCGGAATGAATGAACCTCATTGCTATGCACACAAATGGTTTGAAATAGAATGCAAATTTGACAACAATACTTCTTCTGATGTTCCTAAACCTTACTTGAAGTCGTTAAATCTTCAAGTAATCTATTTTTACTCGTACATGAGCATGGTTGAGATTATGAACCCAATTTACCGTTCAAATTGTCAAAAAAACAAAATTAGCATCAACAATAGAAAAACCGTTAATCTTAGAGACAGTCCTTACATATTTTCACAGGCTGAAAACACGTTTCTAGCTGTGGGATGTAACAATCTTGCTTTTCTTCAGTCTAATGGGACAACCGTTGGTGGTTGTGTATCAATTTGTGACGACGACAACAACAAGAACAACAACAGTAACAATTTCAATTTTAATAGTGACGGTTGTAATGGAAGGTATTGTTGTGCAACCTCATTGCCTTCACATCTTTCAGAGTTTAACGCAACACTAAGAGGTTTAAGGGAACAGAGTAGTGATGGTTGTGGTTATGCTTTGATTACAAATGGTAACAGGATACTTTTTGACAGTTCGGATAATATGAACACGGATGATAATGAGACATTGAATGAATTGAAGAACATGGAATATGCTTCTGCAATGCTTGAGTGGGAGATTTTGAATGATATGTTAATTAATTCCACATTTCAACTACCTCCAAATTGTTACAACTCCAAGGTTACTTCTTTAAGTAACAGAACCACCGGTCAGCAATGTCGATGCTCGTCCGGGTTTTACTCTGACTATCTCTACGAAATCTATGGAAATCCATACCTTGGAGGCTGCCCAGTTCTAGAGCAAGACTTTTATAGGAATAATCGATGGAAGAAGTGGGTTATTGTAGGAATTTCATCAAGTCTCGGATCCATCGGTTTTCTCATTGGTTTATGGTTTTTGTACAAAGCTATGAAACGAAGAATGATTAAGAAACGCAGAGAAAAATTCTTCAAAAGAAACGGTGGTCTGCTGTTACAAAAAAGGATGTCTGCAGGAGAAGTAAATGTTGATAGAACTATTCTCTTCACCTTGAAGGATTTAAAGAAAGCCACTGATAATTTCAATAAGGATAGAATTCTTGGAAAGGGAGGCCAAGGTACAGTTTACAAAGGCATGCTGGTGGATGGTAAAATTGTTGCTGTGAAAAAGTTTAAGGTTGAAGGAAAGGTTGAAGAGTTCATCAATGAGTTTGTGATTCTTTCACAAATCAACAATAGAAATGTTGTCAGACTATTGGGATGTTGTTTGGAGACAGAAATTCCTTTGCTTGTTTATGAATTCATTCCCAATGGTAACCTTTTTGAGTATCTGCATGACCAAAATGAGGACATACCAATGACATGGGACATGCGTTTGAGAATTGCCTCTGAAGTTGCTGGTGCTATATTTTATTTGCACTCAGTTGCATCTCAGCCAATTTATCATAGAGACGTCAAATCAACAAATATACTATTGGATGAAAAGTATAGGGCAAAATTAGCAGATTTTGGAGCATCAAGAATAATTTCAATTGAAGCTACTCATCTTACCACAATGGTCCAAGGTACTTTTGGATACTTAGACCCTGAATATTTTTACACTAGTCAATTCACAGAGAAAAGTGATGTTTACAGCTTTGGAGTAGTCCTTGCTGAACTTTTAACTGGTAAGAAGCCAATATCTTCTGTAACAAGATCTGAGGATTCAAAAAATTTAGCTTCCTATTTTGTTCAGTGTATAGAGGAGAATATATTGTTTGACATTATTGACAAAAGGGTCATAGAAGGAGGAGAGAAAGAACATATCATTTCAGTTGCAAATCTTGCATATAGATGCTTAGAAATAAATGGAAGAAAACGACCAACCATGAAAGAAGTCACATTAGAATTGGAAGGGATTAGGGGATTCAATAAGAAGCTTAATGCACAACAAAATAACGAGGAAATTGAGTTTTCTGGAATCGAACAGTACCAACCTTGGGATGGGTTTTCTGCATCAAATTCATTATCAATTATCAGCAGCCAAACACACTCCACAGACTAG 2133 0.3624 MIQPLTIFHIIVLIISPSLASAQEDGIVSVPFPFGMNEPHCYAHKWFEIECKFDNNTSSDVPKPYLKSLNLQVIYFYSYMSMVEIMNPIYRSNCQKNKISINNRKTVNLRDSPYIFSQAENTFLAVGCNNLAFLQSNGTTVGGCVSICDDDNNKNNNSNNFNFNSDGCNGRYCCATSLPSHLSEFNATLRGLREQSSDGCGYALITNGNRILFDSSDNMNTDDNETLNELKNMEYASAMLEWEILNDMLINSTFQLPPNCYNSKVTSLSNRTTGQQCRCSSGFYSDYLYEIYGNPYLGGCPVLEQDFYRNNRWKKWVIVGISSSLGSIGFLIGLWFLYKAMKRRMIKKRREKFFKRNGGLLLQKRMSAGEVNVDRTILFTLKDLKKATDNFNKDRILGKGGQGTVYKGMLVDGKIVAVKKFKVEGKVEEFINEFVILSQINNRNVVRLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEDIPMTWDMRLRIASEVAGAIFYLHSVASQPIYHRDVKSTNILLDEKYRAKLADFGASRIISIEATHLTTMVQGTFGYLDPEYFYTSQFTEKSDVYSFGVVLAELLTGKKPISSVTRSEDSKNLASYFVQCIEENILFDIIDKRVIEGGEKEHIISVANLAYRCLEINGRKRPTMKEVTLELEGIRGFNKKLNAQQNNEEIEFSGIEQYQPWDGFSASNSLSIISSQTHSTD 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09621 710 FunFam Wall-associated receptor kinase 2 465 682 - -
Vifa1g09621 710 Gene3D Phosphorylase Kinase; domain 1 359 464 - -
Vifa1g09621 710 FunFam Wall-associated receptor kinase 2 361 464 - -
Vifa1g09621 710 CDD STKc_IRAK 397 663 - -
Vifa1g09621 710 SUPERFAMILY Protein kinase-like (PK-like) 376 658 IPR011009 -
Vifa1g09621 710 SMART serkin_6 391 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09621 710 Gene3D Transferase(Phosphotransferase) domain 1 465 687 - -
Vifa1g09621 710 ProSiteProfiles Protein kinase domain profile. 391 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09621 710 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 674 IPR045274 GO:0007166
Vifa1g09621 710 Pfam Protein kinase domain 391 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09621 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09621 Vifa-Chr1 1544686552 1544689544 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09621 26 664 Receptor kinase-like Gene Family AT1G69730 43.213 4.47e-176 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vifa1g09621 Pkinase 8.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09621 - - mtr:11415953 963.37