Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09620 ATGATTATACCATTCACAATATTTCATATCATTGTTTTAATAATATCTCCCATATCTCCTTCACTGGCCTCGGCACAGGAAGATGGAATCATAGCACAATATGGTTGTAATTCAACATGTGGAACAGTTTCAGTCCCTTTCCCATTCGGAATGAATGAACCTCATTGCTATGCACACAAATGGTTTGAAATAGAATGCAAATTTGACAACAATACTTCTTCTAGAGATCCTAAGCCTTACTTGAAGTCGTTAAATCTTCAGGCTGAAAACACGTTTCTAGCTGTGGGATGTAACAACCTTGCTTTTCTTCAGTCAAACGGGACAACTGTTGGTGGTTGTGTATCAATTTGTGATGACAACAACAGTAACAATTACAATTTCACTAGTGACGGTTGTAATGGAAGGTATTGTTGTGAAACCTCATTGCCTTCACATCTTTCAGAGTTTAACGCAACACTAAGAGGTTTAAGGGAACAGAGTAGTGATGGTTGTGGTTATGCTTTGATTGCAAGTGATTATTGGATAATGTTAGATAGTTCGTATCTGAGTATTTATGAGATTGAGACACTGAATGAGATGAAGAATATGGAATATGCTCCTGCAATGCTTGAGTGGGAGATTTTGAATTATATGTTAATAAATTCGACATTTCAACTACCTCCAAATTGTTATGACTCCAAGGTTACTTCCTTAAGTAACAGAACCACTGGTCAACAATGTGGGTGCTCCTTGGGCTACTATGGCAATCCCTACCTTGATGGAGGCTGCACAGAAATTCCAGGATTCTTTGATAAGCATAACCGATCAAAGAAGTGGGCTATTGTAGGAATTTCATCAAGTCTCGGATCCATCGGTTTCCTCATTGGTCTATGGTTTTTGTACAAAGCTATGAAACGAAGAATGATAAAGAAACGCAAAGAAAAATTCTTCAAAAGAAATGGTGGTTTGTTGTTACAAAAAAGAATGTCTTCAGGAGAAGTAAATGTTGATAGAACTACTCTCTTCACCTTAAAGGATTTAAAGAAAGCCACTGATAATTTCAATAAGAATAGAGTTCTTGGAAAGGGGGGCCAAGGTACAGTTTACAAAGGCATGCTGGTGGATGGTAAAATTGTTGCTGTGAAAAAATTTAAGGTTGAAGGAAAGGTTGAAGAGTTCATCAATGAGTTTGTTATTCTTTCACAAATCAACAATAGAAATGTTGTCAAACTATTGGGATGTTGTTTGGAGACAGAAATTCCTTTGCTTGTTTATGAATTCATTCCCAACGGTAACCTTTTTGAGTATTTGCATGACCAAAATGAGGACATACCAATGACATGGGACATGCGTTTGAGAATTGCAACAGAAATTGCTGGAGCTTTATTTTATTTGCACTCAATTGCATCTCAGTCAATTTATCATAGAGACGTCAAATCAACAAATATACTATTGGATGAAAAGTATAGGGCAAAATTAGCAGATTTTGGAGCATCAAGAATAATTTCAATTGAAGCTACTCACCTTACCACAATGGTTCAAGGTACTTTTGGATACTTAGACCCTGAATATTTTCACACTAGTCAATTTACAGAGAAAAGTGATGTGTACAGCTTTGGAGTAGTTCTTGCTGAACTTTTAACTGGTAAGAAGCCAATATCCTCTGCAGAAAGATCTGGGGAATCACAAAGTTTAGCATCTTATTTTGTCCAGTGTGTAGAAGAGAATAAGTTGTTTGAGATTACTGACAAAAGGGTCACAAAAGAAGGGGGGAGAGAACATATCATTGCAGTTGCAAATCTTGCATATAGATGCTTAGAAATGAATGGAAGAAAACGACCAACTATGAAAGAAGTCACATTAGAATTGGAAGGGATCAGGGGATTGAATAGGAAACTTAATGCACAACAAAATCATGACGAAATTGAGCTTTCTGGAATTGAAGAATACCAACCTTGGGATGGGTATTCTGCATCAAATTCATTGCCAATTGTCAGCAGCCAAACACACTCTACAGACTCAGAGGTTATGCATATTCTTGCATTAGAATAG 2031 0.3678 MIIPFTIFHIIVLIISPISPSLASAQEDGIIAQYGCNSTCGTVSVPFPFGMNEPHCYAHKWFEIECKFDNNTSSRDPKPYLKSLNLQAENTFLAVGCNNLAFLQSNGTTVGGCVSICDDNNSNNYNFTSDGCNGRYCCETSLPSHLSEFNATLRGLREQSSDGCGYALIASDYWIMLDSSYLSIYEIETLNEMKNMEYAPAMLEWEILNYMLINSTFQLPPNCYDSKVTSLSNRTTGQQCGCSLGYYGNPYLDGGCTEIPGFFDKHNRSKKWAIVGISSSLGSIGFLIGLWFLYKAMKRRMIKKRKEKFFKRNGGLLLQKRMSSGEVNVDRTTLFTLKDLKKATDNFNKNRVLGKGGQGTVYKGMLVDGKIVAVKKFKVEGKVEEFINEFVILSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEDIPMTWDMRLRIATEIAGALFYLHSIASQSIYHRDVKSTNILLDEKYRAKLADFGASRIISIEATHLTTMVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGKKPISSAERSGESQSLASYFVQCVEENKLFEITDKRVTKEGGREHIIAVANLAYRCLEMNGRKRPTMKEVTLELEGIRGLNRKLNAQQNHDEIELSGIEEYQPWDGYSASNSLPIVSSQTHSTDSEVMHILALE 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09620 676 SMART serkin_6 347 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09620 676 Pfam Protein kinase domain 347 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09620 676 CDD STKc_IRAK 353 619 - -
Vifa1g09620 676 Gene3D Phosphorylase Kinase; domain 1 318 420 - -
Vifa1g09620 676 Gene3D Transferase(Phosphotransferase) domain 1 421 643 - -
Vifa1g09620 676 FunFam Wall-associated receptor kinase 2 317 420 - -
Vifa1g09620 676 ProSiteProfiles Protein kinase domain profile. 347 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09620 676 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 30 627 IPR045274 GO:0007166
Vifa1g09620 676 FunFam Wall-associated receptor kinase 2 421 638 - -
Vifa1g09620 676 Pfam Wall-associated receptor kinase galacturonan-binding 36 73 IPR025287 GO:0030247
Vifa1g09620 676 SUPERFAMILY Protein kinase-like (PK-like) 332 614 IPR011009 -
Vifa1g09620 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09620 Vifa-Chr1 1543675323 1543677982 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09620 31 670 Receptor kinase-like Gene Family AT1G16260 43.018 1.39e-173 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vifa1g09620 Pkinase 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09620 - - mtr:11415953 1033.48