Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09601 ATGGGTGCTCCTAAGCAGAAATGGACATCAGAAGAGGAATCGGCACTCAAAGCTGGAGTTGTCAAGCATGGAGTGGGTAAATGGCGTACGATACTTAAGGATCCTGAGTTTAATTGTGTTTTATTTCTGCGATCAAATGTCGATCTCAAGGATAAATGGAGAAATTTGAGTGTGATGGCAAATGGATGGACCTCCAGGGAGAAGTCTAAGGTGGCAATCAGACGGGTGCATCATTATGGATCAAAACATGATGAAAACTCTCTGGCTGTAATTCCTGTTAGTCCAAGTGACGATGATATTGTTGATGTTAAGCCTCTTCAAGTTTCAAGGGATATGCTCCAGATTCCTGGTCCGAAAAGGTCTATTGAAAGATTGGATAACCTTATCATGGAAGCTATATCTAGCTTGAATGAGCTTGGTGGTTCTAATAAAACAACTATTGCTTCTTTCATATTGGACAATTATTATCCACCGGCAGACTTCAAAAATCTATTGTCAGCAAAACTGAAGTATCTTGCATCTAGTGGAAAACTGATCAAGGTTAAACGTAGGTATAGGATTGCACCAACCCAAACATATTCCGACAGAGGAAGACACCCACCCATGTTATTATTGGAAGGGAGCCAGAAAGGCTCTATGAAATTTGACATTGATGACACCAATATGCCTTCACAGTCTGAGATAGATTATGAGTTAGAAAAGCTAAGGTCCATGTCAGCAGAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTTGCTGAAGCGGAAGCCGCCATAGCGGAAGCTGAAGATGCAACAAGGGAGGCAGAGGCTGCAGAAGCAGATGCAGATGTAGCGCAAGCTTTTGCAGATGCTGCAATGAAATCAGTGAAGGTGAAGAAGAACACCCCAAAGACGACGAACCCTGCTTGA 909 0.4323 MGAPKQKWTSEEESALKAGVVKHGVGKWRTILKDPEFNCVLFLRSNVDLKDKWRNLSVMANGWTSREKSKVAIRRVHHYGSKHDENSLAVIPVSPSDDDIVDVKPLQVSRDMLQIPGPKRSIERLDNLIMEAISSLNELGGSNKTTIASFILDNYYPPADFKNLLSAKLKYLASSGKLIKVKRRYRIAPTQTYSDRGRHPPMLLLEGSQKGSMKFDIDDTNMPSQSEIDYELEKLRSMSAEEAAAVAARAVAEAEAAIAEAEDATREAEAAEADADVAQAFADAAMKSVKVKKNTPKTTNPA 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09601 302 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vifa1g09601 302 Pfam linker histone H1 and H5 family 126 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa1g09601 302 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Vifa1g09601 302 SMART sant 4 59 IPR001005 -
Vifa1g09601 302 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Vifa1g09601 302 Gene3D - 2 59 - -
Vifa1g09601 302 FunFam Telomere repeat-binding factor 1 2 58 - -
Vifa1g09601 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Vifa1g09601 302 SMART h15plus2 119 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa1g09601 302 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa1g09601 302 Coils Coil 244 274 - -
Vifa1g09601 302 Gene3D - 119 196 IPR036388 -
Vifa1g09601 302 SUPERFAMILY "Winged helix" DNA-binding domain 119 198 IPR036390 -
Vifa1g09601 302 PANTHER SINGLE MYB HISTONE 4 1 294 IPR044597 GO:0003691
Vifa1g09601 302 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09601 Vifa-Chr1 1539859452 1539864050 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09601 1 241 Single Myb Histone (SMH) Gene Family AT1G49950 56.911 6.91e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa1g09601 Linker_histone 3.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09601 K09422 - gmx:778173 336.65