Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09598 ATGGTTTTAGAGATGGGTTCCATGTGGGTGGTCCTCATGGCCATTGGTGGTGTTCTTTTGGTCCTAAGATCCATTCTCAAAAATGTAAATTGGTGGCTCTATGAATCCAAATTAGGTGTCAAGCAGTACTCTCTGCCACCAGGTGATATGGGATGGCCCTTCATAGGTAACATGTGGTCCTTTCTTAGAGCTTTCAAGTCTAAGGATCCTGACTCCTTCATCTCTTCTATTGTATCCAGATATGGAAGTAGTGGAATATACAAAGCCTTAATGTTTGGAAATCCAAGTGTAATTGTGACAACATCAGAAGGATGCAAAAGAGTTCTAACAGATGATGAAAAATTCACAACTGGTTGGCCTCAATCTACAATAGAGCTCATTGGAAAGAACTCGTTCATTGCAATGTCTTACGAAGAACACAAGCGCCTTCGCCGTTTAACATCGTCTTCCATCAATGGCATGGAAGCATTGTCTTTGTACTTGAAATACATCGAAGAAAACGTTATCATTTCGTTAGAGAAATGGTCTAACATGGGACAGATTGAGTTTTTAACCGAAATTCGAAAGCTTACTTTTAAAATCATTATGCATATTTTTCTTAGTTCCGAAAGTGAGCCTGTTATGGAAGCTTTGGAAAAAGAATACACAATACTTAATCATGGAGTTAGAGCTATGCAAATCAATGTTCCTGGATTTGCATACTATAAAGCACTCAAGGCTAGAAAAAATTTAGTTGGAATGTTTCAATCTATTGTGGATGATAGAAGAAACACAAGAAAGGTTTATTCACAAAAGAAAGCGAAAGATATGATGGATTCTCTTATAGATGTTGAAGATGATAATGGAAGAAAGTTGAGTGATGAAGATATCATTGATATAATGTTAATGTACTTGAATGCTGGTCATGAGTCTTCAGGACATATCACAATGTGGGCTGCCTATTTTCTACAAAACCATCCTGAATATCTTCAAAAAGCTAAGGAAGAACAAGAAGAAATAATAAAGAGAAGACCTTCAACGCAGAAAGGTTTGACACTTAAGGAAATTCGTAGCATGGATTTTCTATATAAGGTAATCGATGAAACAATGCGCGTGATAACATTTTCATTGGTGGTTTTTCGAGAGGCGAAATCTGATGTAAATATTGATGGTTACCTTGTTCCAAAAGGTTGGAAAGTGCTTACATGGTTCAGATCCGTTCACCTTGATCCTGAAATTTATCCTAATCCAAAGGAATTTAATCCTAATAGATGGAATGAACATAAAGCAGGGGAATTCCTTCCCTTTGGAGCAGGAACTAGATTGTGTCCTGGCAATGATCTTGCCAAAATGGAAATAGCAGTTTTTCTTCATCATTTCACTCTTAATTACCAGCTTGAACAGCTTAATCCTAAGTGTCCTATTAGATATTTACCACATACAAGACCTATGGACAATTGCTTAGGAAGAGTCAAGAAATGTTGA 1464 0.3689 MVLEMGSMWVVLMAIGGVLLVLRSILKNVNWWLYESKLGVKQYSLPPGDMGWPFIGNMWSFLRAFKSKDPDSFISSIVSRYGSSGIYKALMFGNPSVIVTTSEGCKRVLTDDEKFTTGWPQSTIELIGKNSFIAMSYEEHKRLRRLTSSSINGMEALSLYLKYIEENVIISLEKWSNMGQIEFLTEIRKLTFKIIMHIFLSSESEPVMEALEKEYTILNHGVRAMQINVPGFAYYKALKARKNLVGMFQSIVDDRRNTRKVYSQKKAKDMMDSLIDVEDDNGRKLSDEDIIDIMLMYLNAGHESSGHITMWAAYFLQNHPEYLQKAKEEQEEIIKRRPSTQKGLTLKEIRSMDFLYKVIDETMRVITFSLVVFREAKSDVNIDGYLVPKGWKVLTWFRSVHLDPEIYPNPKEFNPNRWNEHKAGEFLPFGAGTRLCPGNDLAKMEIAVFLHHFTLNYQLEQLNPKCPIRYLPHTRPMDNCLGRVKKC 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09598 487 PRINTS E-class P450 group I signature 426 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09598 487 PRINTS E-class P450 group I signature 436 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09598 487 PRINTS E-class P450 group I signature 309 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09598 487 PRINTS E-class P450 group I signature 396 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09598 487 SUPERFAMILY Cytochrome P450 41 477 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09598 487 PANTHER CYTOCHROME P450 26 42 473 - -
Vifa1g09598 487 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 429 438 IPR017972 GO:0005506|GO:0016705
Vifa1g09598 487 Gene3D Cytochrome P450 35 486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09598 487 PRINTS P450 superfamily signature 300 317 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09598 487 PRINTS P450 superfamily signature 427 436 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09598 487 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09598 487 PRINTS P450 superfamily signature 436 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09598 487 Pfam Cytochrome P450 46 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09598 487 CDD CYP90-like 78 486 - -
Vifa1g09598 487 FunFam Ent-kaurenoic acid oxidase 36 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09598 Vifa-Chr1 1539098355 1539102235 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09598 8 484 Cytochrome P450 AT1G05160 65.000 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09598 K04123 - gmx:100781238 865.144