Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09597 ATGGTTTTAGAGATGGGTTCCATGTGGGTGGTCCTCATGGCCATTGGTGGTGTTCTTTTGGTCCTAAGATCCATTCTCAAAAATGTAAATTGGTGGCTCTATGAATCCAAATTAGGTGTCAAGCAGTACTCTCTGCCACCAGGTGATATGGGATGGCCCTTCATAGGTAACATGTGGTCCTTTCTTAGAGCTTTCAAGTCTAAGGATCCTGACTCCTTCATCTCTTCTATTGTATCCAGATATGGAAGTAGTGGAATATACAAAGCCTTAATGTTTGGAAATCCAAGTGTAATTGTGACAACATCAGAAGGATGCAAAAGAGTTCTAACAGATGATGAAAAATTCACAACTGGTTGGCCTCAATCTACAATAGAGCTCATTGGAAAGAACTCGTTCATTGCAATGTCTTACGAAGAACACAAGCGCCTTCGCCGTTTAACATCGTCTTCCATCAATGGCATGGAAGCATTGTCTTTGTACTTGAAATACATCGAAGAAAACGTTATCATTTCGTTAGAGAAATGGTCTAACATGGGACAGATTGAGTTTTTAACCGAAATTCGAAAGCTTACTTTTAAAATCATTATGCATATTTTTCTTAGTTCCGAAAGTGAGCCTGTTATGGAAGCTTTGGAAAAAGAATACACAATACTTAATCATGGAGTTAGAGCTATGCAAATCAATGTTCCTGGATTTGCATACTATAAAGCACTCAAGGCTAGAAAAAATTTAGTTGGAATGTTTCAATCTATTGTGGATGATAGAAGAAACACAAGAAAGGTTTATTCACAAAAGAAAGCGAAAGATATGATGGATTCTCTTATAGATGTTGAAGATGATAATGGAAGAAAGTTGAGTGATGAAGATATCATTGATATAATGTTAATGTACTTGAATGCTGGTCATGAGTCTTCAGGACATATCACAATGTGGGCTGCCTATTTTCTACAAAACCATCCTGAATATCTTCAAAAAGCTAAGGAAGAACAAGAAGAAATAATAAAGAGAAGACCTTCAACGCAGAAAGGTTTGACACTTAAGGAAATTCGTAGCATGGATTTTCTATATAAGGTAATCGATGAAACAATGCGCGTGATAACATTTTCATTGGTGGTTTTTCGAGAGGCGAAATCTGATGTAAATATTGATGGTTACCTTGTTCCAAAAGGTTGGAAAGTGCTTACATGGTTCAGATCCGTTCACCTTGATCCTGAAATTTATCCTAATCCAAAGGAATTTAATCCTAATAGATGGAATAAGGAACATAAAGCAGGGGAATTCCTTCCCTTTGGAGCAGGAACTAGATTGTGTCCTGGCAATGATCTTGCCAAAATGGAAATAGCAGTTTTTCTTCATCATTTCACTCTTAATTACCAGCTTGAACAGCTTAATCCTAAGTGTCCTATTAGATATTTACCACATACAAGACCTATGGACAATTGCTTAGGAAGAGTCAAGAAATGTTGA 1467 0.3688 MVLEMGSMWVVLMAIGGVLLVLRSILKNVNWWLYESKLGVKQYSLPPGDMGWPFIGNMWSFLRAFKSKDPDSFISSIVSRYGSSGIYKALMFGNPSVIVTTSEGCKRVLTDDEKFTTGWPQSTIELIGKNSFIAMSYEEHKRLRRLTSSSINGMEALSLYLKYIEENVIISLEKWSNMGQIEFLTEIRKLTFKIIMHIFLSSESEPVMEALEKEYTILNHGVRAMQINVPGFAYYKALKARKNLVGMFQSIVDDRRNTRKVYSQKKAKDMMDSLIDVEDDNGRKLSDEDIIDIMLMYLNAGHESSGHITMWAAYFLQNHPEYLQKAKEEQEEIIKRRPSTQKGLTLKEIRSMDFLYKVIDETMRVITFSLVVFREAKSDVNIDGYLVPKGWKVLTWFRSVHLDPEIYPNPKEFNPNRWNKEHKAGEFLPFGAGTRLCPGNDLAKMEIAVFLHHFTLNYQLEQLNPKCPIRYLPHTRPMDNCLGRVKKC 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09597 488 Gene3D Cytochrome P450 35 487 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09597 488 PANTHER CYTOCHROME P450 26 42 474 - -
Vifa1g09597 488 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09597 488 PRINTS P450 superfamily signature 428 437 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09597 488 PRINTS P450 superfamily signature 437 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09597 488 PRINTS P450 superfamily signature 300 317 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09597 488 FunFam Ent-kaurenoic acid oxidase 36 488 - -
Vifa1g09597 488 Pfam Cytochrome P450 46 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09597 488 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 430 439 IPR017972 GO:0005506|GO:0016705
Vifa1g09597 488 PRINTS E-class P450 group I signature 427 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09597 488 PRINTS E-class P450 group I signature 309 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09597 488 PRINTS E-class P450 group I signature 396 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09597 488 PRINTS E-class P450 group I signature 437 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09597 488 SUPERFAMILY Cytochrome P450 41 478 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g09597 488 CDD CYP90-like 78 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09597 Vifa-Chr1 1539098355 1539102235 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09597 8 485 Cytochrome P450 AT1G05160 65.000 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09597 K04123 - gmx:100781238 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09597 1 1539098355 1539102235 Vifa1g09597 1 1539098355 1539102235 ECH