Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09594 ATGTGTAGTAGTATCTTTGTGTCATCAACAACAACTATGGACAATTACCAAGGTGATTTAACTGACATAATCAGAGCTACTGGTACTGGAGCTGGAGCATATAGTACAATCACTTCATCATCATCTTCTGAACCTCTTTTACAACATCATCATCATCATCATGATAATCAGTGGCATCCTCATCCTCAACCTATGAGTTTCTCTAATTCCATTCTTGAAGATAATAGATCAGGATCAACCAACAACATCAACATCAACATGAACATGAACATGAACATGAACATCTTTGGTGATCCATTATTCTCAACTTTAAGAGATCCATTTCTACAAGAGCTTGATCATATACCTTCTTCTTCCTACTTCAACATCCCAACTAGTAGTATAATTGATGTTGCAGCTTCTGGTGTTAGTGTTACTACTAATTCATCATCTTCTTCTGCTTCTGTTTTTGTACTTGATCAAGATCATCATCATCAACATCATCATCATGAGATGATGAGATCAGGTTCAAGGCCATGTAAAAACATATTCTCAAACATGATTCAGATCTCTCCTAATGCAACAAAGCTATCAAATTATGAATCTTCCTCTTCAACCATGGCACCTTCTCCAAGGCAAATTAAACCCGTTGTTGCTGTTTCAACCAACATCAATATTAATGCTAAGGATTCTCTTCTAGACAACTCAGGAGGAACAGTTCAGATCTCATCTTCAAGGAATAATACAGGCCTTAAACGAAGGAAAAATCAAGCAAAAAAGGTGGTATGTATTCCTGCACCAGCAGCTGCAAACAGTAGACAAACTGGTGAAGTTGTTCCTTCAGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTTATCCAAGGGGTTATTATAGATGCAGCAGTTCAAAGGGTTGTTCGGCAAGGAAACAAGTTGAGAGAAGCAGAACAGATCCAAACATGTTAGTTATAACTTACACTTCAGAACATAATCATCCATGGCCAACACAAAGAAATGCTTTAGCAGGTTCAACGAGATCTCAACCATCCAAAAACAACACTTCCATGAAAAACTCAGAAACTTCATCTCAACCACAAAATGACACACCAACAACAACAACAAAGCCAAAAGAAGAACAACATCAAGAGAGTGATGGAAATGGAAATGATTCACCAGTTGTTAACAGTGTGAAGGAAGAGAGTATGGAAGATATAGAGAAGTTGCAAATTGAGATGGATGAAGGAGATCGATTCAATGACGCACTTTCTTATAAACCTTGTTTGATGGAAAATAATCAAAGCCATGAGGATTTCTTTGCTGAATTAGGTGAAATTGAAGCTGATCCATTAAACCTATTGTTTAATCAAGGTTTTGGTGGTAATTCAAGTAATGATATTATTCATCAAAGAGATCATCAATCCAAGAGTTTAGATGCATTTCATCTCTTTGACTGGTCAGGTGACAACAACAACAACAACAACAACAATTCCAACAACTCATTTGAAGAACCAAATAAAAGAAGGTTATTATGA 1530 0.366 MCSSIFVSSTTTMDNYQGDLTDIIRATGTGAGAYSTITSSSSSEPLLQHHHHHHDNQWHPHPQPMSFSNSILEDNRSGSTNNININMNMNMNMNIFGDPLFSTLRDPFLQELDHIPSSSYFNIPTSSIIDVAASGVSVTTNSSSSSASVFVLDQDHHHQHHHHEMMRSGSRPCKNIFSNMIQISPNATKLSNYESSSSTMAPSPRQIKPVVAVSTNININAKDSLLDNSGGTVQISSSRNNTGLKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNTSMKNSETSSQPQNDTPTTTTKPKEEQHQESDGNGNDSPVVNSVKEESMEDIEKLQIEMDEGDRFNDALSYKPCLMENNQSHEDFFAELGEIEADPLNLLFNQGFGGNSSNDIIHQRDHQSKSLDAFHLFDWSGDNNNNNNNNSNNSFEEPNKRRLL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09594 509 ProSiteProfiles WRKY domain profile. 268 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g09594 509 MobiDBLite consensus disorder prediction 290 402 - -
Vifa1g09594 509 Gene3D WRKY domain 247 327 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g09594 509 MobiDBLite consensus disorder prediction 487 509 - -
Vifa1g09594 509 SUPERFAMILY WRKY DNA-binding domain 271 334 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g09594 509 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 19 453 IPR044810 GO:0003700
Vifa1g09594 509 MobiDBLite consensus disorder prediction 37 60 - -
Vifa1g09594 509 FunFam probable WRKY transcription factor 14 247 327 - -
Vifa1g09594 509 Pfam WRKY DNA -binding domain 275 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g09594 509 MobiDBLite consensus disorder prediction 317 372 - -
Vifa1g09594 509 SMART WRKY_cls 273 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g09594 509 MobiDBLite consensus disorder prediction 487 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09594 Vifa-Chr1 1537665645 1537668181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09594 1 497 WRKY Transcription Factor Family AT1G30650 40.194 6.22e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g09594 WRKY 3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09594 - - aprc:113852911 500.36