Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09593 ATGGACCAATATGAAAAGGTTGAGAAGATTGGTGAAGGAACTTACGGTGTGGTTTACAAGGCGCGTGACCGCGTTACGAATGAGACTATAGCTTTGAAGAAAATCCGACTCGAACAGGAGGATGAAGGAGTTCCTAGCACTGCTATTCGTGAGATTTCTCTTCTTAAAGAAATGCAGCATAGGAACATTGTTAGGTTGCAGGATGTAGTACACAGTGAGAAGCGATTGTATCTGGTTTTCGAGTATCTGGACTTAGATCTGAAGAAGCATATGGATTCATCTCCCGAGTTTGTAAAAGATCCTCGACAAGTAAAAATGTTCCTTTATCAAATGCTCTGTGGAATTGCTTACTGTCATTCACATAGAGTTCTTCACCGAGACTTGAAACCACAGAATTTGTTGATAGATCGCCGTACTAATTCTCTAAAGCTTGCAGATTTTGGATTGGCCAGGGCATTTGGCATTCCTGTCAGAACATTTACACATGAGGTAGTTACACTGTGGTACCGAGCTCCAGAAATATTGCTTGGTTCCCGTCATTATTCAACCCCAGTCGATGTTTGGTCAGTGGGATGTATATTTGCAGAGATGTCAAACCGACGACCTCTATTCCCTGGGGATTCTGAGATTGACGAGTTGTTTAAAATATTCAGAATCTTGGGTACACCAAACGAAGATGCATGGCCAGGAGTAACTTCATTGCCTGATTTTAAATCAACATTTCCCAGGTGGCCAGCTAAGGACCTAGCGACCGTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTATTTCTAGCATGCTTTGCTTGGACCCCAGCAAAAGAATCACCGCCAGGAGCGCCGTCGAACATGAATACTTCAAAGACATCAAATTTGTACCCTAA 885 0.4305 MDQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFVKDPRQVKMFLYQMLCGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMSNRRPLFPGDSEIDELFKIFRILGTPNEDAWPGVTSLPDFKSTFPRWPAKDLATVVPNLEPAGLDLISSMLCLDPSKRITARSAVEHEYFKDIKFVP 294
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09593 294 FunFam Cell division control protein 2 1 84 - -
Vifa1g09593 294 PANTHER CELL DIVISION PROTEIN KINASE 1 287 - -
Vifa1g09593 294 SUPERFAMILY Protein kinase-like (PK-like) 1 290 IPR011009 -
Vifa1g09593 294 Gene3D Transferase(Phosphotransferase) domain 1 86 292 - -
Vifa1g09593 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vifa1g09593 294 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Vifa1g09593 294 CDD STKc_CDK1_CdkB_like 4 287 - -
Vifa1g09593 294 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vifa1g09593 294 ProSiteProfiles Protein kinase domain profile. 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09593 294 SMART serkin_6 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09593 294 Pfam Protein kinase domain 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09593 294 FunFam Cell division control protein 2 homolog 86 292 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa1g09593 Vifa-Chr1 1537061748 1537068543 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09593 1 294 Core Cell Cycle Gene Families AT3G48750 83.673 0.0 521
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vifa1g09593 Pkinase 8e-80 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09593 K02206 - gmx:100782865 580.482