Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09588 ATGAAAAGAAAACAGGAAGCACATTATGCTGTGGGAATAGACCTTGGCACAACGTATTCATGTGTTGCAGTATGGCAAGAAGAACACTGTCGAGTTGAAATCATTCACAATGATCAAGGCAACAGAACTACTCCTTCTTTTGTTGCTTTCACCGAAAATCAGAGATTGATCGGTGATGCTGCTAAAAATCAAGCTTCTGCCAACCCTCAAAACACTGTCTTTGATGCTAAGAGGTTAATTGGTAGGAAGTTTAGTGATCCTATTGTTCAAGATGATATACTTTTATGGCCGTTCAAAGTCGTTTCTGGTGTTGACGACAGACCCATGATTACAGTTCAGTACAAAGATCAAGAGAAGCAACTCTATGCCGAAGAAGTATCATCTATGGTACTCACCAAGATGCGAGAAATTGCTGAGAATTATTTAGAATCACCGGTTAAGAATGCTGTTGTTACTGTACCAGCTTATTTTAATGATTCACAACGAAAAGCAACTATAGATGCCGGTGTTATTGCTGGCCTCAATGTGATGAGAGTAATGAATGAACCTACTGCTGCAGCGGTTGCATATGGCCTTGACAAGAGAACTAACTGTGTTGGAGAAAGAAATATTTTTGTCTTTGATCTTGGGGGTGGCACGTTTGATGTGTCTTTACTAACCATTAAGGGTAATGCCTTCAAAGTTAAGGCAACTGCTGGAAACACTCACCTTGGTGGAGAAGATTTTGATAATAGAATGGTGAACTACTTTGTACATGAGATCAAGAGAAAGAAAAAAATGGATATTAGTGGGAATCCAAAAGCCTTGAGGAGGTTGAGAACTGCTTGTGAGAGGGCGAAAAGATCACTTTCTTTCCTTGTTGTCACAGCTATTGAGGTAGATTCTTTATGTCAAGGCATTGACTTTTCTTCATCAATCAATAGGGCCAAGTTTGAGGAAATGAATATGGACCTTTTCAATGAGTGTATAAAGACGGTTGAGATTTGTCTTACCGATGCTAAGATGGACAAGGGCAGTGTAGATGATGTCGTCCTTGTCGGTGGATCTTCTAGGATTCCGAAAGTACAAGAGCTATTACAAGACTTTTTTAATGGAAATGGGTTGTGCAAGAGCATTAATCCTGATGAGGCAGTAGCTTATGGGGCAGCTGTTCAGGCTGCATTGTTGAGCCAAGACGTTAAGAACGTCCCAAAATTGGTGCTGCAGGATGTTACACCTTTGTCTCTTGGAAGATCAATAACAGAAGATATTATGCATGTGGTGATTCCTAAGAACACTTGCATTCCTGTCAAGAAGACAGGATCATATGTTGCAAGTCAAGATAACCAAACCGGTGACACGATTTTGGTTTATGAGGGTGAGAGAGCAAGAGCCAGTGACAACAATTTGCTTGGTTCTTTTACTCTTTCTGGCATTCCCCCAGTTCCTCGCGGCAGCCCTCTCTCAAATGTTTGTTTTTCTATTGATGAAAATGGTATTTTGACTGTTTCAGCTAATAATAATGTTTCTGGAGTTTCAAACAAGATTACAATAACCAATCACAGAGATAGATTGTCAAGTCAGGAAATTAAAAAATTGATTCAAGAAGCTGAGAGTTACCAAATTGAAGACAAGAAATTCCTAAGGAAAGCCAAAGCGCTGAATGCATTGGATGACTACATTTACAAAATGAGAAATGTTTTAAAGAAAAAGGATATTAGTCTAAAGCTCTCCTCTCAAGAAATTGAGATTATCGAATCTTCAATTACTGCGACTACAAATTTGATTGATAACAATAAGCTAGAGGTAGAAATAGATGTTTTGGAGGACCATCTAAAGGGACTTAAGAGTACCATAGAAGACATTTTAGCTAAGACTATTTAG 1863 0.3886 MKRKQEAHYAVGIDLGTTYSCVAVWQEEHCRVEIIHNDQGNRTTPSFVAFTENQRLIGDAAKNQASANPQNTVFDAKRLIGRKFSDPIVQDDILLWPFKVVSGVDDRPMITVQYKDQEKQLYAEEVSSMVLTKMREIAENYLESPVKNAVVTVPAYFNDSQRKATIDAGVIAGLNVMRVMNEPTAAAVAYGLDKRTNCVGERNIFVFDLGGGTFDVSLLTIKGNAFKVKATAGNTHLGGEDFDNRMVNYFVHEIKRKKKMDISGNPKALRRLRTACERAKRSLSFLVVTAIEVDSLCQGIDFSSSINRAKFEEMNMDLFNECIKTVEICLTDAKMDKGSVDDVVLVGGSSRIPKVQELLQDFFNGNGLCKSINPDEAVAYGAAVQAALLSQDVKNVPKLVLQDVTPLSLGRSITEDIMHVVIPKNTCIPVKKTGSYVASQDNQTGDTILVYEGERARASDNNLLGSFTLSGIPPVPRGSPLSNVCFSIDENGILTVSANNNVSGVSNKITITNHRDRLSSQEIKKLIQEAESYQIEDKKFLRKAKALNALDDYIYKMRNVLKKKDISLKLSSQEIEIIESSITATTNLIDNNKLEVEIDVLEDHLKGLKSTIEDILAKTI 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09588 620 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 546 619 IPR029048 -
Vifa1g09588 620 PRINTS 70kDa heat shock protein signature 398 417 - -
Vifa1g09588 620 PRINTS 70kDa heat shock protein signature 61 69 - -
Vifa1g09588 620 PRINTS 70kDa heat shock protein signature 149 169 - -
Vifa1g09588 620 PRINTS 70kDa heat shock protein signature 212 222 - -
Vifa1g09588 620 PRINTS 70kDa heat shock protein signature 479 495 - -
Vifa1g09588 620 PRINTS 70kDa heat shock protein signature 372 392 - -
Vifa1g09588 620 PRINTS 70kDa heat shock protein signature 39 51 - -
Vifa1g09588 620 PRINTS 70kDa heat shock protein signature 9 22 - -
Vifa1g09588 620 PRINTS 70kDa heat shock protein signature 340 356 - -
Vifa1g09588 620 FunFam Heat shock 70 kDa 238 321 - -
Vifa1g09588 620 Coils Coil 591 618 - -
Vifa1g09588 620 FunFam Heat shock 70 kDa protein 392 547 - -
Vifa1g09588 620 Gene3D - 74 129 - -
Vifa1g09588 620 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 394 547 IPR029047 -
Vifa1g09588 620 SUPERFAMILY Actin-like ATPase domain 9 194 IPR043129 -
Vifa1g09588 620 SUPERFAMILY Actin-like ATPase domain 201 390 IPR043129 -
Vifa1g09588 620 Gene3D - 548 620 IPR029048 -
Vifa1g09588 620 FunFam heat shock 70 kDa protein-like 74 129 - -
Vifa1g09588 620 Pfam Hsp70 protein 10 617 IPR013126 GO:0005524|GO:0140662
Vifa1g09588 620 ProSitePatterns Heat shock hsp70 proteins family signature 2. 206 219 IPR018181 -
Vifa1g09588 620 Gene3D - 11 387 - -
Vifa1g09588 620 ProSitePatterns Heat shock hsp70 proteins family signature 1. 13 20 IPR018181 -
Vifa1g09588 620 ProSitePatterns Heat shock hsp70 proteins family signature 3. 343 357 IPR018181 -
Vifa1g09588 620 Gene3D Actin; Chain A, domain 4 238 321 - -
Vifa1g09588 620 FunFam Heat shock protein 70 11 202 - -
Vifa1g09588 620 Gene3D - 195 369 - -
Vifa1g09588 620 PANTHER HEAT SHOCK PROTEIN 70KDA 10 571 IPR013126 GO:0005524|GO:0140662
Vifa1g09588 620 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 395 551 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09588 Vifa-Chr1 1536283190 1536285197 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09588 10 618 Calmodulin-binding Proteins AT3G12580 65.738 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09588 K03283 - gmx:102667572 853.203