Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09573 ATGGCAACAACAGAGACAGCTTCTCCTGCGCTTGGTCCTCGATATGCACCGGATGATCCCACTCTTCCGAAACCGTGGTTGGGGTTGATTGATGGAGGTACTGGTACGTTGTACTATTGGAATCCTGAAACTAATGTTACTCAATATGATAAGCCGGTACATTTGGCTCCGCCTGTGCCTGCTGGTTCTGCGCCCAACTTGGCGCCTATACCGGGTGGGACGGGGCAACAACAGCAGGGGAATCATTTTGCCCAACCGCATGGTCAACAGATGCCACAGCAACAGAGTCCTCATGTGGCGCAGGGTGCTCAGCAGCAGCCTTCTCAATCTGCTCAACCAGCGCAGCAGCAGCAGAACTCTCAGCTTGCACAGCCGACGCAACAGCCTGGATTACATCAAGCTAGACCACAGATGATGCAGCCTCAAGGGCAGCAGATGATGCAGTATCAAGGACAGCAATTTCAGCAAATGCATCATCAGGTGCCTCCGCAGGGGATTCGTCCCCAACAATTCGGGCAAGGTAATCCTCAGGATCATGGTACACATATTGTGCAACCGCAAGCGCCTCAATTTACCCCTCAGAACATGCATTATATGGGGTATCAACAAAACATGATTACACCATCACCCAGGCAACCTAACTCCCAGCAGGTTCATCCAAACATGACCCCATCTGGGCAGCCAACACCCCAGCATAACATGCATAACCAGCCTTTTGAAAACCAACAAGATTTTAAACCAGCAATACCAAAGGTGGAGGAAGCTGAGTTTAAAAATGGAAGCCAAGTTGGTTTCTCACCATCACAGTATCAACAAAGGAGTTCCTTGCCTGTTCAGAACAACCCAAATATTCCTGCTGAAATAAGTTCTGGTCAAGTGTCTAATTCAGGTGTTAATTCTGGCCAACCACAACAATTCAGGGGGTTTTCAGGCAGTATGCAGCAGCCTACCCCGACAATGCAGTCACAGCAGGGTGGTTCTGATTTATTTTATCAACATGCTCCTAACTATCAAAACCAGATGAGCCCGGGAATGATGCATGGGCATCCATCTAATGCCCATCCTGCTGCCCAAAAGATGGGACACGAAGACAATGTACACGGTAGAGCTGGAAATGACTATTATTATAATTCTAATAAAGAGATGCCGCCAATGGGTCGTCAGCAGTCAGATATGGCCCAAATGCCAATTTCCAGAAATCAGCAGGATATGAGGATTGGCAATTCCCCTTTTCAAAATAATGTCCCTAGTGGAAATGGAAGTGGTATTACTGGGAATACTATGGGTAACATGTTCACCTCTCCTATTGGAGGACCTCCTGCCCTTTCAAGTAACTCATTTACAAGGCCTCCTTATGGTGGATCTTCGGATGTTACTGATCTCTCACCAGCTGAAATATACTGTCGGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCACCTTTCATGACATTTGATTCTACCGGGTTCCCTCCAGAGATATTGCAAGAGGTATGTTCTGCAGGCTTCTCGAATCCAACGCCAATACAGGCTCAAACATGGCCTATTGCACTACAGGGTAGAGACATAGTGGCGATTGCCAAAACAGGCTCTGGGAAAACACTAGGCTACTTGATGCCGGCCTTCATTCTTCTTAGGCAGCGACGCAATAATTCTCTTAATGGCCCCACCGTCTTGGTTTTGGCTCCAACACGTGAGCTTGCTACACAGATCCAAGAGGAGGTCTTCAAATTTGCACGGTCTTCAAGAGTATCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCTCTTCAGCTAAAAGAGTTAGATCGGGGGGCAGACATTGTTGTTGCCACACCTGGTAGGCTCAATGATATACTTGATATGAAAAAAATTGACTTTAGACAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTTAATGAGATTCCACCACATAGACAAACTCTCATGTACACTGCAACCTGGCCTAAAGAAGTAAGAAAAATTGCTGGCGATCTTCTTGTTAACCCAGTTCAGGTTAACATTGGAAATGTAGATGAGCTTGCTGCAAACAAATCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAGAGGCGTCTAGAGCAGATCCTCAGATCCCAGGAACGAGGTTCTAAGATTATAATATTTTGTTCCACAAAAAAGTTATGTGATCAGCTTGCCCGTAGTATTGGCAGAACTTTTGGAGCAGCTGCAATTCATGGAGACAAGTCTCAAGGTGAGAGAGACTATGTTTTAGGTCAGTTTCGGAATGGGAAGTCTCCAATTTTGGTTGCCACTGATGTTGCTGCTCGTGGTCTTGATATTAAGGATATAAGGGTTGTGATCAACTTTGATTTCCCCAATGGCGTTGAAGACTATGTACACCGAATTGGAAGAACTGGGCGGGCAGGTGCTACTGGAATGGCATATACCTTTTTCTCTGAGCAGGATTGGAAACATGCAGGTGATTTGATCAAAGTTTTGGAGGGTGCTAACCAACACGTGCTTCCAGAGTTAAGGCAGATTGCTTTGCGTGGGCCACCAAGCTTTGGAAAGGATAGGGGCGGGATGACTCGGTTTGACTCTGGTAGTGGTGGCGGACGTTGGGAGCCTGGTGGTCGTGGTGGCATGAGGGATGGTGGCGGCTTTGGTCCTCGTGGTGGCATGAGGGATGGTGGTAGCTTTGGTGGAGGCTTTGGTGGTCGTGGTAGCACAAGGGACGGTGGTAGCTTTGGCAGTCGCGGTGGAATGAGGGATGGACCTGGTGGACAAGGTGAGAGAGGTGGTGATTTCTTTCCTGGTAGAGGCAATAGGGGTAGAGGATTTGGTCCTCCACGTGGGGGGCATGTTGGTTGGGGTAGGGGTGACCGTGGTGGTCCTAGTGATCGCTACAACATGGATGGTCGCGGACAAGGGCGCGGACGTGGACGATTTGACAACAGAAGAGATGTTCCGAGAAGTAGAGACAGAAGTTACAGTCGTAGCCCCGAAAGAGTTCGAACATGGGATATTAACAGAAGCAGCAGTAGAAGTAGAAGTAGAAGTAGGAGCTGGAGCAGGGGTCGCAGTAGAAGCCGCAGCTGGTCTCGAGGTCGCAGTCGCAGCTATAGCCGTAGCCCACGACGGAGTCATAGCCGTGACCGAAGCTATAGCCGCAGCCGCAGCCCCAAAAAGAATAATAGGCGTGTTAAGTCTAAATTTTCCGATAAGATTGATATTGTGGCACCTGAAGCAGGAGCTTCTGATCCTAAAGTGTCCCCTATATCTGCCAACACCCAAGAGAATTCTGTTTTGGGAACAGAACATCTGGAGCAGCTACCTGTTGTTGGAAGCACTGGTCCAGATAATCCAGAGGCTGTTAGTCATCAAGCAGCTTCTGATATTTGA 3447 0.4804 MATTETASPALGPRYAPDDPTLPKPWLGLIDGGTGTLYYWNPETNVTQYDKPVHLAPPVPAGSAPNLAPIPGGTGQQQQGNHFAQPHGQQMPQQQSPHVAQGAQQQPSQSAQPAQQQQNSQLAQPTQQPGLHQARPQMMQPQGQQMMQYQGQQFQQMHHQVPPQGIRPQQFGQGNPQDHGTHIVQPQAPQFTPQNMHYMGYQQNMITPSPRQPNSQQVHPNMTPSGQPTPQHNMHNQPFENQQDFKPAIPKVEEAEFKNGSQVGFSPSQYQQRSSLPVQNNPNIPAEISSGQVSNSGVNSGQPQQFRGFSGSMQQPTPTMQSQQGGSDLFYQHAPNYQNQMSPGMMHGHPSNAHPAAQKMGHEDNVHGRAGNDYYYNSNKEMPPMGRQQSDMAQMPISRNQQDMRIGNSPFQNNVPSGNGSGITGNTMGNMFTSPIGGPPALSSNSFTRPPYGGSSDVTDLSPAEIYCRQHEVTATGDNIPPPFMTFDSTGFPPEILQEVCSAGFSNPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNSLNGPTVLVLAPTRELATQIQEEVFKFARSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILDMKKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPHRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKSITQYVEVVPQMEKQRRLEQILRSQERGSKIIIFCSTKKLCDQLARSIGRTFGAAAIHGDKSQGERDYVLGQFRNGKSPILVATDVAARGLDIKDIRVVINFDFPNGVEDYVHRIGRTGRAGATGMAYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQIALRGPPSFGKDRGGMTRFDSGSGGGRWEPGGRGGMRDGGGFGPRGGMRDGGSFGGGFGGRGSTRDGGSFGSRGGMRDGPGGQGERGGDFFPGRGNRGRGFGPPRGGHVGWGRGDRGGPSDRYNMDGRGQGRGRGRFDNRRDVPRSRDRSYSRSPERVRTWDINRSSSRSRSRSRSWSRGRSRSRSWSRGRSRSYSRSPRRSHSRDRSYSRSRSPKKNNRRVKSKFSDKIDIVAPEAGASDPKVSPISANTQENSVLGTEHLEQLPVVGSTGPDNPEAVSHQAASDI 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09573 1148 MobiDBLite consensus disorder prediction 439 455 - -
Vifa1g09573 1148 MobiDBLite consensus disorder prediction 1105 1120 - -
Vifa1g09573 1148 FunFam ATP-dependent RNA helicase RhlB 694 866 - -
Vifa1g09573 1148 MobiDBLite consensus disorder prediction 1060 1074 - -
Vifa1g09573 1148 MobiDBLite consensus disorder prediction 980 1030 - -
Vifa1g09573 1148 SMART helicmild6 744 824 IPR001650 -
Vifa1g09573 1148 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 445 863 - -
Vifa1g09573 1148 Pfam DEAD/DEAH box helicase 509 679 IPR011545 GO:0003676|GO:0005524
Vifa1g09573 1148 MobiDBLite consensus disorder prediction 70 152 - -
Vifa1g09573 1148 MobiDBLite consensus disorder prediction 1033 1059 - -
Vifa1g09573 1148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 839 IPR027417 -
Vifa1g09573 1148 SMART ww_5 21 54 IPR001202 GO:0005515
Vifa1g09573 1148 MobiDBLite consensus disorder prediction 209 241 - -
Vifa1g09573 1148 CDD SF2_C_DEAD 704 833 - -
Vifa1g09573 1148 MobiDBLite consensus disorder prediction 261 281 - -
Vifa1g09573 1148 MobiDBLite consensus disorder prediction 51 152 - -
Vifa1g09573 1148 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 516 690 IPR014001 -
Vifa1g09573 1148 MobiDBLite consensus disorder prediction 866 1148 - -
Vifa1g09573 1148 Gene3D - 695 865 IPR027417 -
Vifa1g09573 1148 MobiDBLite consensus disorder prediction 1 27 - -
Vifa1g09573 1148 MobiDBLite consensus disorder prediction 439 458 - -
Vifa1g09573 1148 Pfam Helicase conserved C-terminal domain 716 824 IPR001650 -
Vifa1g09573 1148 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Vifa1g09573 1148 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 485 513 IPR014014 GO:0003724
Vifa1g09573 1148 SMART ultradead3 504 707 IPR014001 -
Vifa1g09573 1148 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 636 644 IPR000629 -
Vifa1g09573 1148 FunFam probable ATP-dependent RNA helicase DDX17 451 693 - -
Vifa1g09573 1148 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Vifa1g09573 1148 SUPERFAMILY WW domain 14 55 IPR036020 GO:0005515
Vifa1g09573 1148 Gene3D - 461 694 IPR027417 -
Vifa1g09573 1148 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 719 863 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09573 Vifa-Chr1 1534430461 1534437179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09573 473 844 Eukaryotic Initiation Factors Gene Family AT3G19760 33.780 5.68e-63 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09573 K12823 - gmx:100807830 1306.2