Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09571 ATGGCCATGGAAACCGAGGTTGTCACCACCACTCCACAGTTGGCGCTGTCTGATACAGACATCAACTGGGACAGATTGGATAAGACTAGGTTCCACATCATTGGTGCAATACTCTTCACAGCTCAATCAGCATTTCTTCACCCAACAGCAGTGGTGAAAACAAGGATGCAAGTAGCTAGTTCAGGACTCTCTAACATGAAGGGAATGTCAGTGTTCACTCATATTATCAAGAGTGATGGAATTCCTGGAATCTTTAGAGGTTTTGGTACTTCTGCTATTGGATCAATGCCTGGTAGGGTTTTAGCCCTTACATCTCTTGAGATGTCAAAGGATATTGTGTTGAAACACACTCAAGCTACTGATATTCCAGAAGCTTCACGGATTGGCCTCGCAAATGGAGTTGCTGGCATGGTTTCAAATTTGGTATCTTGTGTTTATTTTGTGCCCTTGGATGTGATCTGCCAGAGGTTAATGGTTCAAGGTCTACCTGGAACTTCGTGTTGTAGAGGACCGTTTGATGTTATCCGAAGAGTACTGCACGCGGAGGGTTTTCGTGGTTTGTATAGAGGTTTTGGATTAACGGCTGTAACACAATCTCCAGCATCTGCACTATGGTGGGGTTCATATGGTGCAGCACAACACATAATTTGGAGGAGTTTTGGATACAAAGATGATATGGAAAAGAAGCCTTCACATGTGGAAATGGTGACAGTTCAAGCTACTGCTGGGATGGTGGCTGGTGCTTGTTCCTCTGTTATCACTACTCCCATAGATACCGTTAAAACACGACTTCAGGTTATGGACAATTATGGTTCTGGAAGACCATCGGTACTGAAGACGGCAAGAACTCTTCTTAAGGAAGATGGATGGTGGGGATTTTACCGAGGGTTTGGACCAAGATTTTTGAATATGTCACTTTATGGAACAACTATGATTGTTACTTATGAACTCATAAAGAGATTATCGGTACAACCAAGTCTGAGTTCTTTTGCTTAA 996 0.4307 MAMETEVVTTTPQLALSDTDINWDRLDKTRFHIIGAILFTAQSAFLHPTAVVKTRMQVASSGLSNMKGMSVFTHIIKSDGIPGIFRGFGTSAIGSMPGRVLALTSLEMSKDIVLKHTQATDIPEASRIGLANGVAGMVSNLVSCVYFVPLDVICQRLMVQGLPGTSCCRGPFDVIRRVLHAEGFRGLYRGFGLTAVTQSPASALWWGSYGAAQHIIWRSFGYKDDMEKKPSHVEMVTVQATAGMVAGACSSVITTPIDTVKTRLQVMDNYGSGRPSVLKTARTLLKEDGWWGFYRGFGPRFLNMSLYGTTMIVTYELIKRLSVQPSLSSFA 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09571 331 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 12 324 - -
Vifa1g09571 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 234 321 IPR018108 -
Vifa1g09571 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 127 215 IPR018108 -
Vifa1g09571 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 27 112 IPR018108 -
Vifa1g09571 331 Gene3D Mitochondrial carrier domain 123 326 IPR023395 -
Vifa1g09571 331 SUPERFAMILY Mitochondrial carrier 24 317 IPR023395 -
Vifa1g09571 331 Pfam Mitochondrial carrier protein 131 218 IPR018108 -
Vifa1g09571 331 Pfam Mitochondrial carrier protein 33 116 IPR018108 -
Vifa1g09571 331 Pfam Mitochondrial carrier protein 238 322 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09571 Vifa-Chr1 1534124837 1534126589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09571 18 321 Chloroplast and Mitochondria Gene Families AT5G15640 50.000 2.96e-106 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09571 K15121 - gmx:112997745 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09571 1 1534124837 1534126589 Vifa1g09571 1 1534124837 1534126589 ECH