Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09569 ATGCTTAAGGATACCTATCACCTTGCTACAACTTCCATTTCTGCACTATTTGAGACTTTAAGAAACAAATATCATTGGTATTTACATATGACAATTAAACACATGAATTTACTGCAACAAAAGAAACAATCACTCCTTTCTCAATCTCTAAATCTAGAGCTAGATCCACTCACCGCCAAAAACAAAAACATTTTCCTCCTACTCACAACACCATCTTCTTCTCCTTCTCCTATACCAAAAACCCTTTTCAAATTCTTCTCCATTTCCACCACTAACCCACAATCTTTCACCGTCTCTTACCTCATCAACAACTGCGGCTTCTCCCCAGAAACCGCTTCCAAAGCTTTCCAAAATCTCACTCTCTCCAACTCCCAAAAACCCGATTCAATTCTCGCCTTCTTCACTACCCACGGCTTCTCCATCTCCCAACTCCGCGACATCATCAGACGTGAACCCTGGCTACTCTCATGCGACCCCAACAAGGTTCTTTTACCAAAGTTTCAATTTTTACTTTCCAAAGGCGCTTCTTCCTCTGATATTGTTCGTATTGTTAATTCAAGCCCTAGACTTCTTAGAAGAAGCTTAGAGAATCATATAGTTCCTGCATATCAATGTGCAAAAGGGTTTCTTCAATCTGACAAAAAAACCATTGCTTGTGTTAAACGTTTTTGTTTTCTTTGTCAAAGTGGGCTGCCTGAAAATGTCAAATTGTTGCTTGATAATGGAGTTTCTCACTCTAATATTGCTAGGCTGTTTCATTGGTGGCCTAGTATAATTTGCTCATTTGATTTGTTGCACACTGTTGAAGAACTGAAAGAACTCGGTTTCGATGGCTCCACTTCCGCTTTTAGTAAGGCGTTTCTCGCGAAGAGAAGTGCCACTAAAGCGCAGTGGGATGAGAAAGTTGAAACCTTTAAGAAATGGGGCTGGTCTGATGAACAGATTCTTGAAACATTTAAGAAGCATCCTTTCTGTATGCTGGTATCGCCTCGGAAAATCAATGCAATCATGGATTTTTGGGTTTACCACCTAGGTTTGGATTCTTTGGACCTTGCCAGAGCTCCTGGAATTCTTCAATGCAGTCTCGAGAAGAGGATTATTCCTAGAGCTTCGGTTGTGCAGTTTCTTATCTCGAAAGGCTTGCGACAGAAGGATGCAGGCGTGTATACGCCGTTTGTTGTATCTGAGAAGTTGTTTGTGGAGAAGTTTGTGAAAGGCTTTGAGGAGCATTCTTCTGATCTCATAAAGCTTTATGAGGAAAAACTGAATCTTGCAGATGGTAGGAACGGCATTCAGCTGATAGTTGAGTGCAGGCGGGTATTAAAGTGGACATATGCATATGGATTCTATTTAGCGGAGCATGAGCATGCGAAAAAGCAGTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCAGGTTTAGAGAGACTTCATCAATGTGCCGAAAAGGAACTCCAAGTATTCCTCAATGGTGATGGCCCATCTAAAGATTTCAATGATTTTCGCACAAAGCTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGAATTAGAGAATGGTTTATGCGATGTGGATAGCAATGGAGCTGCTTCCAGTAAAGCAACGGGTTCAAAAAATGTTGCAGGGAGCAGCAAGGGAAGAGGCGGAAGAGGAAAGGGGACGGTTCGAGCTAGCATGTCCAGCAGAATTACTGATGATAATCATTGGTCTTGTGAGCAATGTACCTATGCGAATGTCAGATCTGCCACTGCATGCCAGATGTGCAACCAACCGCGTCGATGA 1797 0.4213 MLKDTYHLATTSISALFETLRNKYHWYLHMTIKHMNLLQQKKQSLLSQSLNLELDPLTAKNKNIFLLLTTPSSSPSPIPKTLFKFFSISTTNPQSFTVSYLINNCGFSPETASKAFQNLTLSNSQKPDSILAFFTTHGFSISQLRDIIRREPWLLSCDPNKVLLPKFQFLLSKGASSSDIVRIVNSSPRLLRRSLENHIVPAYQCAKGFLQSDKKTIACVKRFCFLCQSGLPENVKLLLDNGVSHSNIARLFHWWPSIICSFDLLHTVEELKELGFDGSTSAFSKAFLAKRSATKAQWDEKVETFKKWGWSDEQILETFKKHPFCMLVSPRKINAIMDFWVYHLGLDSLDLARAPGILQCSLEKRIIPRASVVQFLISKGLRQKDAGVYTPFVVSEKLFVEKFVKGFEEHSSDLIKLYEEKLNLADGRNGIQLIVECRRVLKWTYAYGFYLAEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQVFLNGDGPSKDFNDFRTKLAGLTSVTRNYFENLVRELENGLCDVDSNGAASSKATGSKNVAGSSKGRGGRGKGTVRASMSSRITDDNHWSCEQCTYANVRSATACQMCNQPRR 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09569 598 SUPERFAMILY Ran binding protein zinc finger-like 570 597 IPR036443 -
Vifa1g09569 598 ProSiteProfiles Zinc finger RanBP2 type profile. 570 598 IPR001876 -
Vifa1g09569 598 FunFam Mitochondrial transcription termination factor-like 195 411 - -
Vifa1g09569 598 ProSitePatterns Zinc finger RanBP2-type signature. 574 593 IPR001876 -
Vifa1g09569 598 SMART zf_4 572 596 IPR001876 -
Vifa1g09569 598 MobiDBLite consensus disorder prediction 534 562 - -
Vifa1g09569 598 Gene3D Transcription termination factor 3, mitochondrial 227 412 IPR038538 -
Vifa1g09569 598 Gene3D Transcription termination factor 3, mitochondrial 94 226 IPR038538 -
Vifa1g09569 598 PANTHER CGI-12 PROTEIN-RELATED 94 406 IPR003690 GO:0003690|GO:0006355
Vifa1g09569 598 Pfam mTERF 131 276 IPR003690 GO:0003690|GO:0006355
Vifa1g09569 598 Pfam mTERF 232 384 IPR003690 GO:0003690|GO:0006355
Vifa1g09569 598 SMART mt_12 348 382 IPR003690 GO:0003690|GO:0006355
Vifa1g09569 598 SMART mt_12 249 277 IPR003690 GO:0003690|GO:0006355
Vifa1g09569 598 SMART mt_12 145 176 IPR003690 GO:0003690|GO:0006355
Vifa1g09569 598 SMART mt_12 181 212 IPR003690 GO:0003690|GO:0006355
Vifa1g09569 598 SMART mt_12 316 347 IPR003690 GO:0003690|GO:0006355
Vifa1g09569 598 Gene3D - 568 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09569 Vifa-Chr1 1533658927 1533663073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09569 434 597 ARIADNE family AT1G65430 64.024 7.07e-59 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa1g09569 mTERF 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09569 K15032 - gmx:102667698 376.326