Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09554 ATGGTGTTGGAAACGGAAATCATTTATCAGCAAAGCATTCCCGTGTTGGATGTCAAGTATCACCTTTGCGTTTCTCAAGAAAATGCCGTCAAGGTTGACGTTTCACCTGCTTCCAATGTTGTTCCGGTTTTTAATCAACTTAGGGTTTCTTCTGAATCCGTTTCAACAGAAACGTCTCTCTTTGGATCGACTGCGAGTCGCTCTGAGATGATAACTGATACTATTATAGAAGAAGCTGTTGCAAAATTTACCCCAATTGTTCGTTCTGGTAGCTGTGCTGATATTGGACCGAGGGGATCAATGGATGATGATCATATTCAAATAGATGATTTAGCTACCCACCTTGGATTCATGTTAAAATATCCTACACCGAGTGCTTTTTATGGAGTTTTTGATGGGCACGGAGGTCCTGATGCAGCTCTGTTTGTTAAGAACAATGCTATGCAATTATTTTTTGAAGACGCTAAAATGCTGCAATCGTATGGCACTGATGCACTTCTAATGAAGAGGTTGGAAGATTCTCATCGGAAAGCTTTTCTAGGTGCCGACCTTGCAATGGCTAATGAAAAGAGTATTAGTAGTTCTTGTGGGACAACAGCACTGACTGCTCTGATACTTGGAAAACATTTGTTGGTTGCCAATGCTGGTGATTGTCGAGCCGTTCTTTGTAAGCGTGGAGTAGCTGTTGACATGTCTCACGATCACAGACCAAGTTATTTACCCGAGCGGAAGAGAGTGGAAGAGTTGGGTGGTTATATTGATGATGGATATCTCAATGGTTATCTTTCTGTAACTCGTGCCCTTGGCGACTGGGACTTAAAATTACCCATTGGTTCTGCCTCGCCTCTCACTGCTGAGCCCGATGTTCAGGTGGTCACATTGACTGTGGAAGATGAGTTCTTAATAATCGGTTGTGATGGCATTTGGGATGTAATGTCAAGCCAGGAAGCAGTTAGTCTTGTCCGTCGAGGATTAAGAAGGCACGATGACCCACAACAATGTGCCAGGGAGCTTGTCAAAGAAGCATTGCGCCTGCACACAACAGATAATCTTACTGTAATTGTTATTTGTCTGTCTCCTGTTGAAAGCATTGTTGAATCATGTCCACCTCAAAGGCGAAGATTCAGAGCTTGCTCTCTGTCTGAAGAGGCTCGAAACAAATTAAGGAGCTTGCTTGAAAGTAACTGA 1188 0.431 MVLETEIIYQQSIPVLDVKYHLCVSQENAVKVDVSPASNVVPVFNQLRVSSESVSTETSLFGSTASRSEMITDTIIEEAVAKFTPIVRSGSCADIGPRGSMDDDHIQIDDLATHLGFMLKYPTPSAFYGVFDGHGGPDAALFVKNNAMQLFFEDAKMLQSYGTDALLMKRLEDSHRKAFLGADLAMANEKSISSSCGTTALTALILGKHLLVANAGDCRAVLCKRGVAVDMSHDHRPSYLPERKRVEELGGYIDDGYLNGYLSVTRALGDWDLKLPIGSASPLTAEPDVQVVTLTVEDEFLIIGCDGIWDVMSSQEAVSLVRRGLRRHDDPQQCARELVKEALRLHTTDNLTVIVICLSPVESIVESCPPQRRRFRACSLSEEARNKLRSLLESN 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09554 395 Gene3D - 72 362 IPR036457 -
Vifa1g09554 395 ProSiteProfiles PPM-type phosphatase domain profile. 88 358 IPR001932 -
Vifa1g09554 395 SMART PP2C_4 78 356 IPR001932 -
Vifa1g09554 395 Pfam Protein phosphatase 2C 98 350 IPR001932 -
Vifa1g09554 395 ProSitePatterns PPM-type phosphatase domain signature. 127 135 IPR000222 GO:0043169
Vifa1g09554 395 FunFam Probable protein phosphatase 2C 22 72 361 - -
Vifa1g09554 395 SUPERFAMILY PP2C-like 82 360 IPR036457 -
Vifa1g09554 395 PANTHER PROTEIN PHOSPHATASE 2C 65 356 IPR015655 GO:0004722|GO:0006470
Vifa1g09554 395 CDD PP2Cc 87 358 IPR001932 -
Vifa1g09554 395 SMART PP2C_SIG_2 103 358 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09554 Vifa-Chr1 1530834931 1530836740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09554 1 392 PP2C-type Phosphatase Gene Family AT1G48040 55.500 1.06e-145 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09554 K14803 - gmx:100798957 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09554 1 1530834931 1530836740 Vifa1g09554 1 1530834931 1530836740 ECH
Vifa4g04121 4 1312501047 1312502689 Vifa1g09554 1 1530834931 1530836740 PCT