Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09547 ATGGAAGTTAAAGCAAGTGTAACAAGCAACTCAAACATCACCACCATGCTCCAAAGTGATGATGATGAAATGGATCTTCGAAGAGGTCCATGGACTGTTGATGAAGATCTTGCTCTCATCAATTACATTGCAACTCATGGTGAAGGTCGTTGGAATACCCTTGCTCGTTCAGCTGGACTCAAACGAACCGGAAAGAGCTGTAGATTGAGATGGTTGAATTATCTTCGACCAGATGTTCGTCGAGGTAACATCACACTTGAAGAACAACTTTTGATTCTTGAGCTTCATAGTCGTTGGGGAAATCGATGGTCGAAAATTGCTCAATATTTACCTGGAAGAACCGATAATGAAATAAAGAATTATTGGAGAACTCGTGTTCAAAAACACGCCAAACAACTTAAATGTGACGTAAATAGTAAGCAATTCAAAGATGCAATGCGCTATCTTTGGATGCCAAGGCTAGTGGAGCGAATCCAAGCTGCCGCAGCATCCACTTCCACTGCCCCAGCCACCACCATTAATAATGGTTCTCCGAATGTTACAACAACGGTCGCCACAAACAACTCGACGTACAACGTTAACGACAATTCCAATATTCATAACTCGAATGCAAACATGATGTTAACTCCAACAATCATGAACACGAACAATATAGGTTGTTTGCATGTAGCACAAAGTTTTACACCGGAAAATAGTAGCAATGGTGCGACGGCCGCGTCATCGGATTCGTTCGGGACACAAGTTTCGCCTATTTCGGATTTAACTCAAGATTATTACAATGTCTCTATTGGTGGTAACAACAATATTAACCCTAATTCTAATTCTGATTATTACCAACAATCTCATCAATTTGGATTTTCAGATTGCATCACTAGTCCATCAGGTTTGTTCCCTCAAATGGATTTCAATAATTCATTGGAACCAAACACACCTTGGATTCAAGGGGACACATCCGACAATTTCTGGAATGTTGAAAACATGTTGCTCTTACAACAACTCAATGACAACATGTTAAAATAA 1020 0.401 MEVKASVTSNSNITTMLQSDDDEMDLRRGPWTVDEDLALINYIATHGEGRWNTLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAASTSTAPATTINNGSPNVTTTVATNNSTYNVNDNSNIHNSNANMMLTPTIMNTNNIGCLHVAQSFTPENSSNGATAASSDSFGTQVSPISDLTQDYYNVSIGGNNNINPNSNSDYYQQSHQFGFSDCITSPSGLFPQMDFNNSLEPNTPWIQGDTSDNFWNVENMLLLQQLNDNMLK 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09547 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 130 IPR017930 -
Vifa1g09547 339 SUPERFAMILY Homeodomain-like 25 122 IPR009057 -
Vifa1g09547 339 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 23 202 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vifa1g09547 339 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Vifa1g09547 339 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Vifa1g09547 339 FunFam Myb transcription factor 28 80 - -
Vifa1g09547 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 79 IPR017930 -
Vifa1g09547 339 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Vifa1g09547 339 CDD SANT 30 75 IPR001005 -
Vifa1g09547 339 Gene3D - 85 148 - -
Vifa1g09547 339 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Vifa1g09547 339 Gene3D - 25 81 - -
Vifa1g09547 339 SMART sant 80 128 IPR001005 -
Vifa1g09547 339 SMART sant 27 77 IPR001005 -
Vifa1g09547 339 FunFam MYB transcription factor 85 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09547 Vifa-Chr1 1527633564 1527635262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09547 21 332 MYB Transcription Factor Family AT5G49620 50.888 3.68e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g09547 Myb_DNA-binding 8.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09547 K09422 - gmx:100805341 428.328