Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09533 ATGGAAAACATGGCGGTTTTGGAAGAAACACATACTCGAACTGTTCGATCTTGTGCTTGGTCACCTTCTGGGAAATTGTTAGCTACTGCAAGTTTTGATGCCACCACTGCTATATGGGAAAATGTTGGGGGTGATTTTGAGTGTGTCTCTACTTTGGAGGGACATGAAAACGAAGTAAAGAGTGTATCTTGGAATGCATCTGGAACTTTGCTTGCAACTTGCAGTAGAGATAAGTCCGTTTGGATATGGGAAGTGCAGCCAGGCAATGAGTTTGAGTGTGTCTCAGTGCTGCAAGGACATACTCAGGATGTGAAAATGGTGAGGTGGCACCCAACAGAGGATATCTTATTTTCATGTAGCTATGATAATAATATTAAGGTCTGGGCAGATGAAGGTGATAGTGACGATTGGCAGTGTGTTCAAACCCTTGGAGAACCCAACAAGAGAAGAAAGCTCTGA 459 0.4336 MENMAVLEETHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKSVSWNASGTLLATCSRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVRWHPTEDILFSCSYDNNIKVWADEGDSDDWQCVQTLGEPNKRRKL 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09533 152 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 97 128 - -
Vifa1g09533 152 Pfam WD domain, G-beta repeat 92 128 IPR001680 GO:0005515
Vifa1g09533 152 Pfam WD domain, G-beta repeat 47 83 IPR001680 GO:0005515
Vifa1g09533 152 Pfam WD domain, G-beta repeat 10 39 IPR001680 GO:0005515
Vifa1g09533 152 ProSiteProfiles Trp-Asp (WD) repeats profile. 52 93 IPR001680 GO:0005515
Vifa1g09533 152 SMART WD40_4 4 40 IPR001680 GO:0005515
Vifa1g09533 152 SMART WD40_4 90 129 IPR001680 GO:0005515
Vifa1g09533 152 SMART WD40_4 45 84 IPR001680 GO:0005515
Vifa1g09533 152 Gene3D - 2 149 IPR015943 GO:0005515
Vifa1g09533 152 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 52 86 - -
Vifa1g09533 152 ProSitePatterns Trp-Asp (WD) repeats signature. 71 85 IPR019775 -
Vifa1g09533 152 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 8 40 - -
Vifa1g09533 152 PANTHER WD40 PROTEIN CIAO1 3 145 IPR028608 GO:0016226|GO:0097361
Vifa1g09533 152 SUPERFAMILY WD40 repeat-like 10 144 IPR036322 GO:0005515
Vifa1g09533 152 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 128 IPR001680 GO:0005515
Vifa1g09533 152 ProSiteProfiles Trp-Asp (WD) repeats profile. 8 40 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09533 Vifa-Chr1 1521602790 1521604869 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09533 17 152 U-box Gene Family AT2G33340 26.471 6.94e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09533 K24730 - gmx:100778826 296.589