Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09519 ATGGAGGAGAAGAAGAGAAAAGCAAACACAAACCCCACCCACTCATCCTCCACCACCACCATGGCATTTTCCGACGAGATTCCGACCACAACCACCACCATCAACAATAACACATCTTTATTCCCTTTTCAAGCTTCAATCTCCACCATCTTTGACACGTTGCCATCTTCCTCGTGTGACCAAAAAGTTTCCTCTTTTGGATTCATGGACTTGTTAGGCTCCCACGATTACAACATAAACAACAACACTTTTTTGTTATCCGATTGGGTTCTTCCTACAACAACCACGGTCATCCAACCTCTTCCATCGCCGGCGAGTTCCAACGTCCTCGACTCCTCCGAGGTGTTGAACACACCAACATCACCAAACTCAACTTCAATTTCTTCATCATCTCACGAAGCCACCTTTAACAACAACACCATAGAACAACAACAACATAGAAGTAAAGTTTCAAAAACTGAACATGATGCAGAGGTAGAAGAAGAAGATGGAAATGGAGTCAAAGAAAATGACAAATATCAAGACAAGACAAAGAAACAGCTAAAAGCAAAGAAGAAGAATCAAAAGAAGGAAAGAGAACCCAGATTTGCTTTCATGACAAAGAGTGAAGTTGATAACCTAGACGATGGCTATAGATGGCGTAAGTACGGTCAAAAAGCTGTTAAAAACAGTCCTTATCCCAGGAGTTACTATCGTTGTACCACGGCAGCCTGCGGCGTGAAAAAGCGCGTGGAGCGTTCATCCGATGATTCTTCCATTGTCGTTACTACATACGAGGGTCAACACACACATCCTTCACCTGCCACGTCACGTCCGAACCTCAGCTTCGTTAACGAACCTTCTAGCTTCGGTGCCGGTGCATTTGGTGGTGGTAGCTCAAGTTCAGGTTCACACTCACAGTCACACTTTGTTCTACCACACGCTTCATCATTGTTGTACAATAATAGTACTAATCCCACTACCAATTCTACTACTACACCCCCTACACTCGGTTCTAGTGGTGGTTATCTTAACACGTCGTCGTTTGGTGGTTTTGTTCACGACCAAGCGATTCATCAAAGAGGTTTTGGAGGTTCCAACGAGGCTATGTTAAGAGACAATGGGTTGCTTCAGGATATTATTACTCAGATGAAAAAAGAGGAAAAAGATTCAATCAATGAACAACACTAG 1170 0.4342 MEEKKRKANTNPTHSSSTTTMAFSDEIPTTTTTINNNTSLFPFQASISTIFDTLPSSSCDQKVSSFGFMDLLGSHDYNINNNTFLLSDWVLPTTTTVIQPLPSPASSNVLDSSEVLNTPTSPNSTSISSSSHEATFNNNTIEQQQHRSKVSKTEHDAEVEEEDGNGVKENDKYQDKTKKQLKAKKKNQKKEREPRFAFMTKSEVDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAACGVKKRVERSSDDSSIVVTTYEGQHTHPSPATSRPNLSFVNEPSSFGAGAFGGGSSSSGSHSQSHFVLPHASSLLYNNSTNPTTNSTTTPPTLGSSGGYLNTSSFGGFVHDQAIHQRGFGGSNEAMLRDNGLLQDIITQMKKEEKDSINEQH 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09519 389 Gene3D WRKY domain 192 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g09519 389 MobiDBLite consensus disorder prediction 258 277 - -
Vifa1g09519 389 MobiDBLite consensus disorder prediction 314 334 - -
Vifa1g09519 389 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 119 313 IPR044810 GO:0003700
Vifa1g09519 389 Pfam WRKY DNA -binding domain 208 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g09519 389 MobiDBLite consensus disorder prediction 103 194 - -
Vifa1g09519 389 MobiDBLite consensus disorder prediction 1 21 - -
Vifa1g09519 389 SMART WRKY_cls 207 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g09519 389 ProSiteProfiles WRKY domain profile. 202 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g09519 389 SUPERFAMILY WRKY DNA-binding domain 199 267 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g09519 389 MobiDBLite consensus disorder prediction 147 178 - -
Vifa1g09519 389 MobiDBLite consensus disorder prediction 103 146 - -
Vifa1g09519 389 FunFam WRKY transcription factor 57 193 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09519 Vifa-Chr1 1518079187 1518080744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09519 177 381 WRKY Transcription Factor Family AT2G47260 51.185 2.73e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g09519 WRKY 3.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09519 - - mtr:11408791 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09519 1 1518079187 1518080744 Vifa1g09519 1 1518079187 1518080744 ECH
Vifa1g09519 1 1518079187 1518080744 Vifa4g04065 4 1297885477 1297887126 PCT