Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09517 ATGTCATCACCTATGATCTCAAACTCAACAAGTGACCGATCACACAGAATAAAGAAAAAGAAGAAAGCCCTATCAAAAATCCAACAACATGCCCAAGAACAAGAACAAAGAATAACCAAATGGAGATCACAAGCTCAACAGCAAATCTACTCTTCCAAACTACACCAGGCTTTAGCCAGAGTCAACCTCTCCGGCACCGTTCCTCGCCGCGGGAAGGCCGTCCGGGAAGCCGCCGATAGAGTTCTCGCCGTCGCAGCCAAAGGAAAAACCCGGTGGAGCCGGGCCATACTCACCAACAAACTAAAGCTCAAGTTTAGAAAACAGAAGAGACATCATCAACAGAGAACCGTCGGTCCATCCCGGTCTAAAAAAGCCCGGTTCTCTGTTTTGCGTCTAAAGGGTAAAACCCTCCCAGCGGTTCAGAGAAAAGTTAAAGTCCTGGCCCGGTTGGTTCCAGGTTGTAGGAAAGAACCTTTACCGGTTATTCTTACCGAAGTTATTGATTATATTCCGGCTCTTGAGATGCAAGTCCGAGCCATGGCAGCTCTAGCTGATTTCCTCGCCGGTGCTTCTTCTTCAGCGGCCTCCGCCTCCGCCTTCCCGCCGCCGAGTTAA 615 0.4959 MSSPMISNSTSDRSHRIKKKKKALSKIQQHAQEQEQRITKWRSQAQQQIYSSKLHQALARVNLSGTVPRRGKAVREAADRVLAVAAKGKTRWSRAILTNKLKLKFRKQKRHHQQRTVGPSRSKKARFSVLRLKGKTLPAVQRKVKVLARLVPGCRKEPLPVILTEVIDYIPALEMQVRAMAALADFLAGASSSAASASAFPPPS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09517 204 Coils Coil 17 44 - -
Vifa1g09517 204 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 42 190 IPR044660 GO:0006355
Vifa1g09517 204 MobiDBLite consensus disorder prediction 1 38 - -
Vifa1g09517 204 CDD bHLH_AtIBH1_like 129 184 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09517 Vifa-Chr1 1516400890 1516401504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09517 38 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 58.125 1.06e-51 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09517 - - gmx:100792237 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09517 1 1516400890 1516401504 Vifa1g09517 1 1516400890 1516401504 ECH
Vifa4g04064 4 1297042587 1297043204 Vifa1g09517 1 1516400890 1516401504 PCT