Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09515 ATGCTTCAGCCATTGATGAATCTTCTCTCTCCATGTTGGAAGCCGTTCGGGCACGGTGACGATTCTTCAGCAGGCATTGTTGGAAGAGAAGGCAAAGACGGATTGCTTTGGTTTCGCGACATCGGAAGGTATGGCTCCGGTGAATTCTCGATGGCCGTTGTTCAGGCCAATCAAATCCTCGAAGATCAGAGCCAGATCGAATCTGGACCCCTTGGAACATTTGTCGGCGTTTACGACGGCCACGGTGGACCCGATGCTGCGCGTTACGTTTGCGATCACTTGTTCCGCAATTTTCAAGCGGCATCGAGTGAGTCACAGGGAGTTGTGACTGCCGAGACAATTCAAACCGCGTTTCGTTCGACTGAAGAGGGGTTTACTGCCATGGTTACTGATTTATGGAATACTCGGCCTCAAGTTGCGACTACTGGAACGTGTTGTTTGGTTGGAGTGATTTTTCAGCAGACGCTTTTTGTTGCAAATTTAGGAGATTCGCGTGTTGTTTTGGGAAAGAAAGTTGGGAATACGGGTGGGGTTGCGGCGATTCAGCTGTCTACGGAACATAATGCGAATCTTGAGGCTGTTAGACATGAACTTAAAGAGTTACACCCTCATGATCCTCAGATTGTTGTTCTCAAGCATGGGGTGTGGAGAGTAAAAGGCATTATTCAGGTTTCTAGATCTATAGGTGACGTATATATGAAACATGCACAGTTTAACCAGGAACCAATTAATGCGAAGTTCAGACTTCCTGAACCAATGAACATGCCTATCTTGTCTGCTAATCCATCTATTCTTTCTCATCCTCTCCAACCAAATGATTCCTTCCTAATATTTGCATCAGATGGTTTATGGGAGCACCTGAATAATGATCAAGCAGTCGAGATTGTTCATAGAAGTCCCCGTGCGGGTAGTGCCAAGAGACTTATCAAGGCTGCCCTGCAGGAAGCAGCTAGAAAACGCGAAATGCGGTATTCAGACCTTCGTTCAATTGACAAGAAAGTTCGACGACATTTTCATGATGATATAACTGTTATTGTTTTATTCTTAAACTCTGACCTTATAACAAGAGGTACAGTTCAAAACCCGCCGCTGTCAATTCGAAGTGCTCTCAATCACTGA 1119 0.4549 MLQPLMNLLSPCWKPFGHGDDSSAGIVGREGKDGLLWFRDIGRYGSGEFSMAVVQANQILEDQSQIESGPLGTFVGVYDGHGGPDAARYVCDHLFRNFQAASSESQGVVTAETIQTAFRSTEEGFTAMVTDLWNTRPQVATTGTCCLVGVIFQQTLFVANLGDSRVVLGKKVGNTGGVAAIQLSTEHNANLEAVRHELKELHPHDPQIVVLKHGVWRVKGIIQVSRSIGDVYMKHAQFNQEPINAKFRLPEPMNMPILSANPSILSHPLQPNDSFLIFASDGLWEHLNNDQAVEIVHRSPRAGSAKRLIKAALQEAARKREMRYSDLRSIDKKVRRHFHDDITVIVLFLNSDLITRGTVQNPPLSIRSALNH 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09515 372 ProSitePatterns PPM-type phosphatase domain signature. 74 82 IPR000222 GO:0043169
Vifa1g09515 372 ProSiteProfiles PPM-type phosphatase domain profile. 45 349 IPR001932 -
Vifa1g09515 372 CDD PP2Cc 49 349 IPR001932 -
Vifa1g09515 372 SMART PP2C_4 35 347 IPR001932 -
Vifa1g09515 372 Pfam Protein phosphatase 2C 71 318 IPR001932 -
Vifa1g09515 372 FunFam Probable protein phosphatase 2C 42 39 357 - -
Vifa1g09515 372 Gene3D - 40 358 IPR036457 -
Vifa1g09515 372 PANTHER PROTEIN PHOSPHATASE 46 347 IPR015655 GO:0004722|GO:0006470
Vifa1g09515 372 SUPERFAMILY PP2C-like 57 350 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09515 Vifa-Chr1 1515371535 1515377369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09515 1 369 PP2C-type Phosphatase Gene Family AT4G38520 57.672 5.16e-157 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09515 K01102 - gmx:100790813 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09515 1 1515371535 1515377369 Vifa1g09515 1 1515371535 1515377369 ECH