Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09512 ATGAAAATTCTCATTTTTATCTTGTTTTGCATACCATGTTATGCTCTTGCTTTTGAAACAAAATCCATCATAGATTCTCCTATGCTAACGAAAAATATAGGAACTAATCGTACAATCATAGTCGATATCAATGGAAAGGGGGACTTTAAATCAGTCCAAGCTGCAATTGATTCAGTTCCAGTAAAAAATTCTAAATGGGTTATCATTCATATTAGAAAAGGAGTATATAGAGAAAAAGTGCATATTCCAAAGACTAAACGCTATATATTCTTGAGAGGAAATGGAAGAGGAAGAACTGCCATTGTTTGGTCTCAAAGTTCATCTGATAATGTTGAATCTGCCACCTTCAAAGCTGAAGCCCCTGATTTCATTGCCTTTGGAATTAGCTTCAAGAATGAAGCACCAACAGGAGTTGCATATACTTCACAAAATCAATCAGTGGCAGCATTTGTGGCAGCAGATAAAATAGCATTTTACCATTGTGCATTTTATAGTACACATAACACACTCTTTGATTACAAAGGTAGACATTATTATGAGTCATGTTACATTCAAGGTTCCATTGATTTCATATTTGGTCGTGGAAGAACAATCTTTCAGAGTTGTGAGATATTTGTTATTGACGATAAAAGGATAACAATTCATGGATCAATAACAGCTGCAAACAAAGAAACTGAACGTGAAATGAGTGGATTTATATTCGTTAAAGGCAAAGTTTATGGCGTTGGTGGAGTGTACTTAGGAAGGGCTAAAGGTCCTTTCTCTAGGGTCATTTTTTCTCATACATATCTCTCAAACACCATTGTCGCTGAAGGATGGACCAATTGGAGTTATGATGGTAGCACAGATAATCTTTACCATGCTGAGCATAAATGCCATGGACCTGGTGCTACAAAAGAGGGAAGAGCTCCTTGGTCAAGGCAACTTACTGATGAACAAGCTGCTAAATTTATATCTATTGATTATATTGATGGCAAGAATTGGTTGCCAGCTTATAAATAA 1002 0.3583 MKILIFILFCIPCYALAFETKSIIDSPMLTKNIGTNRTIIVDINGKGDFKSVQAAIDSVPVKNSKWVIIHIRKGVYREKVHIPKTKRYIFLRGNGRGRTAIVWSQSSSDNVESATFKAEAPDFIAFGISFKNEAPTGVAYTSQNQSVAAFVAADKIAFYHCAFYSTHNTLFDYKGRHYYESCYIQGSIDFIFGRGRTIFQSCEIFVIDDKRITIHGSITAANKETEREMSGFIFVKGKVYGVGGVYLGRAKGPFSRVIFSHTYLSNTIVAEGWTNWSYDGSTDNLYHAEHKCHGPGATKEGRAPWSRQLTDEQAAKFISIDYIDGKNWLPAYK 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09512 333 Pfam Pectinesterase 39 325 IPR000070 GO:0030599|GO:0042545
Vifa1g09512 333 Gene3D - 33 333 IPR012334 -
Vifa1g09512 333 SUPERFAMILY Pectin lyase-like 35 331 IPR011050 -
Vifa1g09512 333 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 33 329 - -
Vifa1g09512 333 ProSitePatterns Pectinesterase signature 2. 184 193 IPR033131 -
Vifa1g09512 333 FunFam Pectinesterase 33 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09512 Vifa-Chr1 1514295041 1514296471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09512 1 329 Carbohydrate Esterase AT5G47500 35.632 1.60e-70 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09512 - - gmx:100792967 534.258