Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09509 ATGGAAACTCCAGAACCAGAAGGCGAGCTTCTGAAGAAGATTGAAAGGCTTGAAGCTGGTCAAGTTCACCTCAAACAAGAAATGTCAAAGCTTAAGCTTTCTCAACGTAGAAGGTCTCACTCCGTTTCACCTCAACGTTCAAGGCTAGGTGCTTCTGCTTCTTCTTTTTCCGCTGCTGCAAATAACAAAGGCTCTTCTTCACCTCTTCAGAGAGAGAGCCGTAGTAGTACCAGTAGTAGTAGTAGTCATGATCCTCATCATCAAAATGGTGGCAAGTATCTCAATATTTTGCAGTCGATTGGTCATTCTGTTCATATATTGGATCTTCATTGTCGCGTTATATTCTGGAACCCTAGTGCTGAGAATCTGTATGGTTATACAGCAGAGGAAGTTCTTGGTCAAGATGGGATTGAAGTGCTTGTGGATTCTGGTGAATTTGAGTTAGCTAATGATGTGTTCAACCGTGTGAAAATGGGGGAAAGTTGGACTGGTCAATTTCCTGTTAAGAATAAGAGAGGTGATAGGTTTGTAGCGGTTGCGACGAATACGCCTTTCTATGATGATGATGGGAGTTTGGTTGGTGTTATTTGTGTCTCGAGTGATTCAAGACCTTTTCTTGAAAATATTGTTCCTTTATCGGTTGGGAAGAATGAAGAAAAGGATTCGGGTGTTAGTTTTTCTAGAATTGGGATTACTAATAAACTCGGTCTTGATCCTCAGCAGCCACTTCAGAATGCTTTAGCTTCGAAAATATCGAATTTGGCTTCAAAGGTGAGTAACAAAGTCAAGTCTAAAATCCGGACTCGAGAAAATGGTGTTGGTGGAGAAACAGAGCGTGGTTTTTCAGACCAGAGAGAGGATGGTGATTCTAGTGGAGCTAGCACACCCGCCAAAGAGGTGCCACAATCTCCTTTCGGTGTATCTTCTCACGTCGAAGAGAGATCACTGGGGAAACCTATGAGAAATTCTGGTGATGAGAGTGAAGAAAAACCGATACACAAAATCATAACTTCTAAGGCGGAATCATGGATTCAAAAGAAAACTATGTCATGGCCATGGAAAACAAATGATCGGGAAGAATCCGAATCAAAGAACGTCCGGGTGTCTTGGCCTTGGATGCAGGATGATCAAGAAAAAGAGCCAGCTAATCAAAAGAACGTGTTTTCTGGATTGAAGCTGGAAAGTCGGGCAAGTGAAAGTTATCAACCCGTTATTAACGAGGCTTCAGGATCCTGGTCATCCTTCAACGCTAACAGCACAAGTAGTACCAGCAGTTGCGGGAGTGGCAGTGGTAGCAGTTCCGCCGCCAATAATAGAGTGGATGTTGACTCCGATTGTTTAGATTACGAAATTTTGTGGGAGGACCTGACAATTGGAGAGTCGATTGGCCAAGGTTCTTGTGGAACTGTATACCATGCTCTGTGGTATGGATCAGATGTTGCGGTCAAGGTTTTCTCAAAGCAAGAATATTCAGAAGATGTAATACAGTCCTTCAGACAAGAGGTATCTCTGATGAAAAAACTTCGCCATCCAAATATTCTACTCTTTATGGGCGCAGTGACTTCACCTCAACGTCTATGCATTGTTACAGAGTTTCTCCCACGCGGAAGCTTATTTCGTTTGCTCCAAAGAAACACGTCCAAACCTGACTGGAGACGGCGGGTTCACATGGCCTTAGATATTGCACGAGGTGTAAATTATCTTCATCATTGCAACCCTCCTATCATCCATCGAGATTTGAAGACGTCAAATCTTCTAGTTGACAAGAATTGGACAGTGAAGGTTGGTGATTTTGGTCTTTCGCGTATCAAACATGAAACCTATCTCACGACTAAGACGGGGAAAGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAACGAACCCTCAAATGAAAAGTCCGACGTTTACAGTTTTGGAGTGATATTGTGGGAACTTGCAACAGAAAAAATCCCTTGGGATACTCTCAATGCAATGCAGGTTATTGGAGCTGTGGGCTTCATGAACCATCGGCTAGAAATTCCGGAAAATGTTGATCCACAGTGGGCTTCCATAATCGAGAGTTGTTGGCATACTGATCCAGCAAGCCGACCAACATTCCAGGAACTGCTGGAAAGGCTTAAAGAGCTGCAAAGACAGTATGCGATTCAGTTCCAAGCAGCCAGATCTGGTGGTGGTGAAGTCGCTCAAAAGGAATCCTAG 2205 0.4367 METPEPEGELLKKIERLEAGQVHLKQEMSKLKLSQRRRSHSVSPQRSRLGASASSFSAAANNKGSSSPLQRESRSSTSSSSSHDPHHQNGGKYLNILQSIGHSVHILDLHCRVIFWNPSAENLYGYTAEEVLGQDGIEVLVDSGEFELANDVFNRVKMGESWTGQFPVKNKRGDRFVAVATNTPFYDDDGSLVGVICVSSDSRPFLENIVPLSVGKNEEKDSGVSFSRIGITNKLGLDPQQPLQNALASKISNLASKVSNKVKSKIRTRENGVGGETERGFSDQREDGDSSGASTPAKEVPQSPFGVSSHVEERSLGKPMRNSGDESEEKPIHKIITSKAESWIQKKTMSWPWKTNDREESESKNVRVSWPWMQDDQEKEPANQKNVFSGLKLESRASESYQPVINEASGSWSSFNANSTSSTSSCGSGSGSSSAANNRVDVDSDCLDYEILWEDLTIGESIGQGSCGTVYHALWYGSDVAVKVFSKQEYSEDVIQSFRQEVSLMKKLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNTSKPDWRRRVHMALDIARGVNYLHHCNPPIIHRDLKTSNLLVDKNWTVKVGDFGLSRIKHETYLTTKTGKGTPQWMAPEVLRNEPSNEKSDVYSFGVILWELATEKIPWDTLNAMQVIGAVGFMNHRLEIPENVDPQWASIIESCWHTDPASRPTFQELLERLKELQRQYAIQFQAARSGGGEVAQKES 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09509 734 MobiDBLite consensus disorder prediction 353 385 - -
Vifa1g09509 734 Pfam Protein tyrosine and serine/threonine kinase 456 708 IPR001245 GO:0004672|GO:0006468
Vifa1g09509 734 MobiDBLite consensus disorder prediction 314 336 - -
Vifa1g09509 734 SUPERFAMILY Protein kinase-like (PK-like) 445 708 IPR011009 -
Vifa1g09509 734 Gene3D PAS domain 102 204 - -
Vifa1g09509 734 ProSiteProfiles PAS repeat profile. 89 160 IPR000014 -
Vifa1g09509 734 ProSitePatterns Serine/Threonine protein kinases active-site signature. 575 587 IPR008271 GO:0004672|GO:0006468
Vifa1g09509 734 NCBIfam PAS domain S-box protein 93 201 IPR000014 -
Vifa1g09509 734 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 46 713 - -
Vifa1g09509 734 MobiDBLite consensus disorder prediction 263 286 - -
Vifa1g09509 734 CDD STKc_MAP3K-like 462 708 - -
Vifa1g09509 734 Pfam PAS domain 105 201 IPR000014 -
Vifa1g09509 734 FunFam PAS domain-containing protein tyrosine kinase family protein 534 725 - -
Vifa1g09509 734 PRINTS Tyrosine kinase catalytic domain signature 679 701 IPR001245 GO:0004672|GO:0006468
Vifa1g09509 734 PRINTS Tyrosine kinase catalytic domain signature 569 587 IPR001245 GO:0004672|GO:0006468
Vifa1g09509 734 PRINTS Tyrosine kinase catalytic domain signature 530 543 IPR001245 GO:0004672|GO:0006468
Vifa1g09509 734 PRINTS Tyrosine kinase catalytic domain signature 616 626 IPR001245 GO:0004672|GO:0006468
Vifa1g09509 734 PRINTS Tyrosine kinase catalytic domain signature 635 657 IPR001245 GO:0004672|GO:0006468
Vifa1g09509 734 MobiDBLite consensus disorder prediction 27 92 - -
Vifa1g09509 734 FunFam PAS domain-containing protein tyrosine kinase 449 533 - -
Vifa1g09509 734 SUPERFAMILY PYP-like sensor domain (PAS domain) 95 198 IPR035965 -
Vifa1g09509 734 ProSiteProfiles Protein kinase domain profile. 456 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09509 734 MobiDBLite consensus disorder prediction 260 339 - -
Vifa1g09509 734 Coils Coil 701 721 - -
Vifa1g09509 734 MobiDBLite consensus disorder prediction 287 302 - -
Vifa1g09509 734 Gene3D Phosphorylase Kinase; domain 1 449 533 - -
Vifa1g09509 734 SMART pas_2 91 157 IPR000014 -
Vifa1g09509 734 SMART serkin_6 456 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09509 734 Gene3D Transferase(Phosphotransferase) domain 1 534 732 - -
Vifa1g09509 734 MobiDBLite consensus disorder prediction 44 92 - -
Vifa1g09509 734 CDD PAS 104 201 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09509 Vifa-Chr1 1514254762 1514258768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09509 1 725 MAP Kinase Kinase Kinase AT3G06620 58.540 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vifa1g09509 PK_Tyr_Ser-Thr 2.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09509 - - gmx:100815858 1017.3