Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09508 ATGGCTTCACCTAATAGAGGAAGAGGTAGAATGGTTTCAAGTAGTAGAGGAAGAGGTGAAGCCAATGCATCATCAATATCACACCAGCATCATCAACTTCATCAAGATAACAACATTAACAACCTGAACGACAGAAATAATAAAAGAGAATCATTATCAATGAGAAAAGCCATAGCTCAGTACACAGAAGACGCAAGACTCCATGCCGTTTTCGAACAATCCGGCGACTCTTTCGATTACGCACAATCCATTCGTGCCACAGCAGCTACTGAATCAGTTCCTGAACAACAAATCACTGCTTACTTAGCCAAAATCCAACGCGGTGGTTTCATTCAACCTTTCGGTTCAATGATCGCCGTCGACGAAGATTCTTTTCGAGTTCTTGCTTACTCTGAAAACGCACGTGACATGCTTGGTATCGCTCCTCAATCGGTTCCTTCCATGGAAGATGATTCGTCGTCTTCTTCGTTTTTCGCTTTAGGTGTTGATGTTCGGTCTCTTTTTACTAATTCAAGTTCTGTTCTTCTTGAGAAAGCTTTTTCAGCTCGGGAGATTAGTTTAATGAATCCTATTTGGATCCACTCTAGAGCTACTGGTAAGCCTTTTTATGGAATTCTTCATAGGATTGATGTTGGTGTTGTTATTGATTTGGAGCCTGCAAGATCTGAGGATCCGGCGCTTTCCATTGCTGGTGCTGTTCAGTCTCAGAAGCTTGCGGTTCGGGCGATTTCGCAGCTTCAGGCGCTTCCTGGTGGTGATGTTAAGCTTCTTTGTGATGCTGTTGTGGAGAGTGTTAGGGAATTGACTGGTTATGATAGGGTTATGGTTTATAAGTTTCATGAGGATGAGCATGGTGAGGTTGTTGCTGAGAGTAAGAGGGTTGATTTAGAGCCTTATATTGGTTTGCATTATCCTGCTACTGATATTCCTCAGGCTTCTAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTAATGCTTCTCCTGTTAGGGTTTTTCAGGATGAGGCGCTTGTTCAGCCTGTTTGTTTGGTTGGTAGTACGCTTCGTGCTCCTCATGGTTGTCATGCTCAGTACATGGCAAATATGGGTTCTATTGCTTCTTTGGCTATGGCTGTTATTATTAATGGGAATGATGAACACGCCGGTGGGATTGCTGGTACTGGATGTAGCTCCATGAGGCTTTGGGGTCTTGTTGTTTGTCATCATACTTCTGCTAGGTGTATTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAATGCAGGCTTTTGGGCTTCAGTTGAATATGGAGCTTCAGTTGGCTGTGCAGTCGTTGGAGAAGCGGGTTTTGAAGACGCAGACTCTGTTGTGTGATATGTTACTTAGGGATTCTCCTACAGGGATTGTTACTCAGAGTCCTAGTATTATGGACTTGGTTAAGTGTGATGGGGCTGCTTTGTATTATCAAGGAAACTACCACCCAATGGGTGTTACCCCAACCGAGTCTCAGATAAGGGATATCATAGATTGGTTGTTGGCCTTTCATAGTGATTCGACGGGTTTGAGTACTGATAGTTTGGCTGATGCTGGTTATCCTGGGGCTGCTTCTCTCGGGGATGCAGTTTGTGGGATGGCTGTTGCGTATATCACTGAGAAAGACTTTCTTTTCTGGTTCAGATCTCATACGGCTAAAGAAATTAAATGGGGTGGTGCAAAGCATCACCCGGAGGATAAGGACGATGGGCAGAGAATGCATCCCCGTTCTTCCTTCAAGGCCTTTCTAGAAGTGGTGAAGAGCCGTAGTATGCAGTGGGAAAATGCAGAAATGGATGCAATTCACTCCTTGCAGCTTATCCTGCGAGACTCGTTTAAGGAAGCTGAGAATAACGATTCAAAGGCTGTTGTGCATACCCATATGGCAGAACTAGAGTTGCAAGGGGTGGATGAACTGAGTTCTGTGGCTAGAGAAATGGTCAGGTTGATAGAAACAGCCACTGCTCCCATATTTGCTGTTGATGTCGATGGCCGCATCAATGGGTGGAATGCAAAGGTTTCTGAATTGACAGGACTTCTGGTAGAGGAGGCTATGGGCAAGTCTTTGGTCCATGATCTTGTGTATAAAGAGTCTCGAGAAGCTGTGGACAAGCTTCTTTCTCATGCCTTAAAAGGTGAAGAAGATAAGAATGTTGAAATAAAAATGAAGACTTTTGGCCCGGGGAATCAAAATAAGGCAGTTTTTATAGTGGTGAATGCTTGCTCGAGCAAGGATTATACAAATAATATAGTTGGAGTGTGTTTTGTTGGCCAGGATGTTACTGGTCAAAAAGTTGTAATGGACAAATTCATTAACATACAAGGTGACTACAAGGCTATTGTGCATAGTCCAAATCCATTGATCCCTCCCATTTTTGCATCGGATGACAACACATGTTGCTTAGAGTGGAACAATGCTATGGAAAAGCTCAGCGGTTGGAGCCGTGCAGATGTCATTGGCAAAATGTTGGTAGGAGAGGTTTTTGGTAGTTTCTGTCAGTTGAAGGGTTCAGATGCTATGACAAAATTCATGATTGTTTTGCACAATGCACTTGGTGGACACGACACGGAAAAATTCCCGTTGTCATTTCTTGACAGACATGGAAAGTATGTACAGACTTTCTTGACCGCAAATAAGAGGGTTAACATGGATGGTCAGATCATTGGAGCTTTTTGCTTTTTACAAATTGTGAGCCCTGAACTTCAACAGGCTCTGACAGTCCAGAAACAACAGGATAGTAGTTCCTTTGCTAGAATGAAAGAGTTAGCTTATATTTGTCAAGAAGTAAAGAATCCCTTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGTCTACCTGCCTGACTGATGAGCAAAAACAGCTTCTTGAGACTAGTGCTGCTTGCGAGAAGCAAATGCTGAAGATAATACGGGACATTGCTCTGGAAAGCATCGAGGATGGATCCCTGGAGCTTGATAAGCGGGAATTCTTGCTCGAGAATGTCATAAATGCAGTTGTTAGCCAAGTAATGATAGTGCTAAGAGATAGAAAGTTACAGTTAATTCGTGATATTCCTGAAGAAATCAAGGCATTGGCTGTTTATGGTGATCAACTGAGGATTCAACAAGTCTTGGCTGATTTCTTAATGAATGTGGTACGCTATGCACCATCTCCAGATGGTTGGGTAGAGATTCATGTATTTCCAAGAATAAAACAAATTTCAGACGGGCTCACTATTCTGCATGCTGAATTTAGGCTGGTGTGTCCTGGTGAAGGTCTTCCGCCTGAATTGATTCAAGACATGTTCCATAACAGTCGGTGGGTGACTCAAGAAGGCTTAGGGCTGAGCATGAGCAGGAAGATTATAAAGTTAATGAATGGCGAAGTCCAGTATGTAAGGGAGGCAGAACGGTGCTACTTCTTAGTTCTTCTTGAACTACCTGTGACACGGAGAAGCTCTAAAACTGTTAATTAG 3480 0.431 MASPNRGRGRMVSSSRGRGEANASSISHQHHQLHQDNNINNLNDRNNKRESLSMRKAIAQYTEDARLHAVFEQSGDSFDYAQSIRATAATESVPEQQITAYLAKIQRGGFIQPFGSMIAVDEDSFRVLAYSENARDMLGIAPQSVPSMEDDSSSSSFFALGVDVRSLFTNSSSVLLEKAFSAREISLMNPIWIHSRATGKPFYGILHRIDVGVVIDLEPARSEDPALSIAGAVQSQKLAVRAISQLQALPGGDVKLLCDAVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRVDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNASPVRVFQDEALVQPVCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDEHAGGIAGTGCSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAVQSLEKRVLKTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGNYHPMGVTPTESQIRDIIDWLLAFHSDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSMQWENAEMDAIHSLQLILRDSFKEAENNDSKAVVHTHMAELELQGVDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVSELTGLLVEEAMGKSLVHDLVYKESREAVDKLLSHALKGEEDKNVEIKMKTFGPGNQNKAVFIVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNNAMEKLSGWSRADVIGKMLVGEVFGSFCQLKGSDAMTKFMIVLHNALGGHDTEKFPLSFLDRHGKYVQTFLTANKRVNMDGQIIGAFCFLQIVSPELQQALTVQKQQDSSSFARMKELAYICQEVKNPLSGIRFTNSLLESTCLTDEQKQLLETSAACEKQMLKIIRDIALESIEDGSLELDKREFLLENVINAVVSQVMIVLRDRKLQLIRDIPEEIKALAVYGDQLRIQQVLADFLMNVVRYAPSPDGWVEIHVFPRIKQISDGLTILHAEFRLVCPGEGLPPELIQDMFHNSRWVTQEGLGLSMSRKIIKLMNGEVQYVREAERCYFLVLLELPVTRRSSKTVN 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09508 1159 ProSiteProfiles PAS repeat profile. 784 836 IPR000014 -
Vifa1g09508 1159 Gene3D PAS domain 797 906 - -
Vifa1g09508 1159 Gene3D PAS domain 645 778 - -
Vifa1g09508 1159 Gene3D - 988 1155 IPR036890 -
Vifa1g09508 1159 SUPERFAMILY GAF domain-like 233 432 - -
Vifa1g09508 1159 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1000 1149 IPR036890 -
Vifa1g09508 1159 Pfam His Kinase A (phospho-acceptor) domain 929 989 IPR003661 GO:0000155|GO:0007165
Vifa1g09508 1159 PIRSF Phytochrome_conventional 34 1157 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Vifa1g09508 1159 MobiDBLite consensus disorder prediction 17 45 - -
Vifa1g09508 1159 ProSiteProfiles PAS repeat profile. 650 721 IPR000014 -
Vifa1g09508 1159 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1037 1143 IPR003594 -
Vifa1g09508 1159 Gene3D - 234 596 IPR029016 -
Vifa1g09508 1159 FunFam Phytochrome 440 570 - -
Vifa1g09508 1159 SUPERFAMILY PYP-like sensor domain (PAS domain) 798 901 IPR035965 -
Vifa1g09508 1159 SMART gaf_1 253 445 IPR003018 GO:0005515
Vifa1g09508 1159 Gene3D - 907 987 - -
Vifa1g09508 1159 Pfam PAS fold 653 768 IPR013767 GO:0006355
Vifa1g09508 1159 Pfam PAS fold 784 903 IPR013767 GO:0006355
Vifa1g09508 1159 CDD HisKA 925 981 IPR003661 GO:0000155|GO:0007165
Vifa1g09508 1159 CDD PAS 661 768 IPR000014 -
Vifa1g09508 1159 Pfam Phytochrome region 448 623 IPR013515 GO:0006355|GO:0009584
Vifa1g09508 1159 ProSiteProfiles Histidine kinase domain profile. 932 1152 IPR005467 -
Vifa1g09508 1159 Gene3D PAS domain 104 356 - -
Vifa1g09508 1159 Pfam PAS fold 100 220 IPR013654 GO:0006355
Vifa1g09508 1159 FunFam Phytochrome 988 1154 - -
Vifa1g09508 1159 FunFam Phytochrome 797 905 - -
Vifa1g09508 1159 CDD HATPase_Phy-like 1036 1148 IPR044767 -
Vifa1g09508 1159 FunFam Phytochrome 906 987 - -
Vifa1g09508 1159 FunFam Phytochrome 646 778 - -
Vifa1g09508 1159 ProSitePatterns Phytochrome chromophore attachment site signature. 353 362 IPR013516 -
Vifa1g09508 1159 SUPERFAMILY PYP-like sensor domain (PAS domain) 655 764 IPR035965 -
Vifa1g09508 1159 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 925 982 IPR036097 GO:0000155|GO:0007165
Vifa1g09508 1159 SMART HisKA_10 925 989 IPR003661 GO:0000155|GO:0007165
Vifa1g09508 1159 Gene3D - 440 613 IPR043150 -
Vifa1g09508 1159 SUPERFAMILY PYP-like sensor domain (PAS domain) 105 222 IPR035965 -
Vifa1g09508 1159 PANTHER OS08G0260000 PROTEIN 95 987 - -
Vifa1g09508 1159 SMART HKATPase_4 1037 1152 IPR003594 -
Vifa1g09508 1159 NCBIfam PAS domain S-box protein 657 772 IPR000014 -
Vifa1g09508 1159 PRINTS Phytochrome signature 353 374 IPR001294 GO:0006355|GO:0009584
Vifa1g09508 1159 PRINTS Phytochrome signature 465 485 IPR001294 GO:0006355|GO:0009584
Vifa1g09508 1159 PRINTS Phytochrome signature 268 287 IPR001294 GO:0006355|GO:0009584
Vifa1g09508 1159 PRINTS Phytochrome signature 583 601 IPR001294 GO:0006355|GO:0009584
Vifa1g09508 1159 PRINTS Phytochrome signature 168 190 IPR001294 GO:0006355|GO:0009584
Vifa1g09508 1159 PRINTS Phytochrome signature 672 687 IPR001294 GO:0006355|GO:0009584
Vifa1g09508 1159 PRINTS Phytochrome signature 746 763 IPR001294 GO:0006355|GO:0009584
Vifa1g09508 1159 PRINTS Phytochrome signature 550 569 IPR001294 GO:0006355|GO:0009584
Vifa1g09508 1159 PRINTS Phytochrome signature 653 669 IPR001294 GO:0006355|GO:0009584
Vifa1g09508 1159 PRINTS Phytochrome signature 766 786 IPR001294 GO:0006355|GO:0009584
Vifa1g09508 1159 CDD PAS 795 903 IPR000014 -
Vifa1g09508 1159 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 253 425 IPR016132 -
Vifa1g09508 1159 Pfam GAF domain 254 435 IPR003018 GO:0005515
Vifa1g09508 1159 MobiDBLite consensus disorder prediction 1 45 - -
Vifa1g09508 1159 SMART pas_2 652 719 IPR000014 -
Vifa1g09508 1159 SMART pas_2 783 853 IPR000014 -
Vifa1g09508 1159 SUPERFAMILY GAF domain-like 443 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09508 Vifa-Chr1 1514118831 1514123528 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09508 41 1150 Histidine Kinase Gene Family AT4G16250 73.142 0.0 1734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09508 K12121 - gmx:100794865 1949.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09508 1 1514118831 1514123528 Vifa1g09508 1 1514118831 1514123528 ECH