Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09507 ATGGCTTCACCTAATAGAGGAAGAGGTAGAATGGTTTCAAGTAGTAGAGGAAGAGGTGAAGCCAATGCATCATCAATATCACACCAGCATCATCAACTTCATCAAGATAACAACATTAACAACCTGAACGACAGAAATAATAAAAGAGAATCATTATCAATGAGAAAAGCCATAGCTCAGTACACAGAAGACGCAAGACTCCATGCCGTTTTCGAACAATCCGGCGACTCTTTCGATTACGCACAATCCATTCGTGCCACAGCAGCTACTGAATCAGTTCCTGAACAACAAATCACTGCTTACTTAGCCAAAATCCAACGCGGTGGTTTCATTCAACCTTTCGGTTCAATGATCGCCGTCGACGAAGATTCTTTTCGAGTTCTTGCTTACTCTGAAAACGCACGTGACATGCTTGGTATCGCTCCTCAATCGGTTCCTTCCATGGAAGATGATTCGTCGTCTTCTTCGTTTTTCGCTTTAGGTGTTGATGTTCGGTCTCTTTTTACTAATTCAAGTTCTGTTCTTCTTGAGAAAGCTTTTTCAGCTCGGGAGATTAGTTTAATGAATCCTATTTGGATCCACTCTAGAGCTACTGGTAAGCCTTTTTATGGAATTCTTCATAGGATTGATGTTGGTGTTGTTATTGATTTGGAGCCTGCAAGATCTGAGGATCCGGCGCTTTCCATTGCTGGTGCTGTTCAGTCTCAGAAGCTTGCGGTTCGGGCGATTTCGCAGCTTCAGGCGCTTCCTGGTGGTGATGTTAAGCTTCTTTGTGATGCTGTTGTGGAGAGTGTTAGGGAATTGACTGGTTATGATAGGGTTATGGTTTATAAGTTTCATGAGGATGAGCATGGTGAGGTTGTTGCTGAGAGTAAGAGGGTTGATTTAGAGCCTTATATTGGTTTGCATTATCCTGCTACTGATATTCCTCAGGCTTCTAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTAATGCTTCTCCTGTTAGGGTTTTTCAGGATGAGGCGCTTGTTCAGCCTGTTTGTTTGGTTGGTAGTACGCTTCGTGCTCCTCATGGTTGTCATGCTCAGTACATGGCAAATATGGGTTCTATTGCTTCTTTGGCTATGGCTGTTATTATTAATGGGAATGATGAACACGCCGGTGGGATTGCTGGTACTGGATGTAGCTCCATGAGGCTTTGGGGTCTTGTTGTTTGTCATCATACTTCTGCTAGGTGTATTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAATGCAGGCTTTTGGGCTTCAGTTGAATATGGAGCTTCAGTTGGCTGTGCAGTCGTTGGAGAAGCGGGTTTTGAAGACGCAGACTCTGTTGTGTGATATGTTACTTAGGGATTCTCCTACAGGGATTGTTACTCAGAGTCCTAGTATTATGGACTTGGTTAAGTGTGATGGGGCTGCTTTGTATTATCAAGGAAACTACCACCCAATGGGTGTTACCCCAACCGAGTCTCAGATAAGGGATATCATAGATTGGTTGTTGGCCTTTCATAGTGATTCGACGGGTTTGAGTACTGATAGTTTGGCTGATGCTGGTTATCCTGGGGCTGCTTCTCTCGGGGATGCAGTTTGTGGGATGGCTGTTGCGTATATCACTGAGAAAGACTTTCTTTTCTGGTTCAGATCTCATACGGCTAAAGAAATTAAATGGGGTGGTGCAAAGCATCACCCGGAGGATAAGGACGATGGGCAGAGAATGCATCCCCGTTCTTCCTTCAAGGCCTTTCTAGAAGTGGTGAAGAGCCGTAGTATGCAGTGGGAAAATGCAGAAATGGATGCAATTCACTCCTTGCAGCTTATCCTGCGAGACTCGTTTAAGGAAGCTGAGAATAACGATTCAAAGGCTGTTGTGCATACCCATATGGCAGAACTAGAGTTGCAAGGGGTGGATGAACTGAGTTCTGTGGCTAGAGAAATGGTCAGGTTGATAGAAACAGCCACTGCTCCCATATTTGCTGTTGATGTCGATGGCCGCATCAATGGGTGGAATGCAAAGGTTTCTGAATTGACAGGACTTCTGGTAGAGGAGGCTATGGGCAAGTCTTTGGTCCATGATCTTGTGTATAAAGAGTCTCGAGAAGCTGTGGACAAGCTTCTTTCTCATGCCTTAAAAGGTATTCTTTCTAAATTTCTGGTTTCATGTCGATTTATTGTGTCTATTAGCAGGAGTTCTCAGATTAAATTATTAGGAAGAACATACATCTTACCAAACATGACAGGTGAAGAAGATAAGAATGTTGAAATAAAAATGAAGACTTTTGGCCCGGGGAATCAAAATAAGGCAGTTTTTATAGTGGTGAATGCTTGCTCGAGCAAGGATTATACAAATAATATAGTTGGAGTGTGTTTTGTTGGCCAGGATGTTACTGGTCAAAAAGTTGTAATGGACAAATTCATTAACATACAAGGTGACTACAAGGCTATTGTGCATAGTCCAAATCCATTGATCCCTCCCATTTTTGCATCGGATGACAACACATGTTGCTTAGAGTGGAACAATGCTATGGAAAAGCTCAGCGGTTGGAGCCGTGCAGATGTCATTGGCAAAATGTTGGTAGGAGAGGTTTTTGGTAGTTTCTGTCAGTTGAAGGGTTCAGATGCTATGACAAAATTCATGATTGTTTTGCACAATGCACTTGGTGGACACGACACGGAAAAATTCCCGTTGTCATTTCTTGACAGACATGGAAAGTATGTACAGACTTTCTTGACCGCAAATAAGAGGGTTAACATGGATGGTCAGATCATTGGAGCTTTTTGCTTTTTACAAATTGTGAGCCCTGAACTTCAACAGGCTCTGACAGTCCAGAAACAACAGGATAGTAGTTCCTTTGCTAGAATGAAAGAGTTAGCTTATATTTGTCAAGAAGTAAAGAATCCCTTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGTCTACCTGCCTGACTGATGAGCAAAAACAGCTTCTTGAGACTAGTGCTGCTTGCGAGAAGCAAATGCTGAAGATAATACGGGACATTGCTCTGGAAAGCATCGAGGATGGATCCCTGGAGCTTGATAAGCGGGAATTCTTGCTCGAGAATGTCATAAATGCAGTTGTTAGCCAAGTAATGATAGTGCTAAGAGATAGAAAGTTACAGTTAATTCGTGATATTCCTGAAGAAATCAAGGCATTGGCTGTTTATGGTGATCAACTGAGGATTCAACAAGTCTTGGCTGATTTCTTAATGAATGTGGTACGCTATGCACCATCTCCAGATGGTTGGGTAGAGATTCATGTATTTCCAAGAATAAAACAAATTTCAGACGGGCTCACTATTCTGCATGCTGAATTTAGGCTGGTGTGTCCTGGTGAAGGTCTTCCGCCTGAATTGATTCAAGACATGTTCCATAACAGTCGGTGGGTGACTCAAGAAGGCTTAGGGCTGAGCATGAGCAGGAAGATTATAAAGTTAATGAATGGCGAAGTCCAGTATGTAAGGGAGGCAGAACGGTGCTACTTCTTAGTTCTTCTTGAACTACCTGTGACACGGAGAAGCTCTAAAACTGTTAATTAG 3585 0.4276 MASPNRGRGRMVSSSRGRGEANASSISHQHHQLHQDNNINNLNDRNNKRESLSMRKAIAQYTEDARLHAVFEQSGDSFDYAQSIRATAATESVPEQQITAYLAKIQRGGFIQPFGSMIAVDEDSFRVLAYSENARDMLGIAPQSVPSMEDDSSSSSFFALGVDVRSLFTNSSSVLLEKAFSAREISLMNPIWIHSRATGKPFYGILHRIDVGVVIDLEPARSEDPALSIAGAVQSQKLAVRAISQLQALPGGDVKLLCDAVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRVDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNASPVRVFQDEALVQPVCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDEHAGGIAGTGCSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAVQSLEKRVLKTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGNYHPMGVTPTESQIRDIIDWLLAFHSDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSMQWENAEMDAIHSLQLILRDSFKEAENNDSKAVVHTHMAELELQGVDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVSELTGLLVEEAMGKSLVHDLVYKESREAVDKLLSHALKGILSKFLVSCRFIVSISRSSQIKLLGRTYILPNMTGEEDKNVEIKMKTFGPGNQNKAVFIVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNNAMEKLSGWSRADVIGKMLVGEVFGSFCQLKGSDAMTKFMIVLHNALGGHDTEKFPLSFLDRHGKYVQTFLTANKRVNMDGQIIGAFCFLQIVSPELQQALTVQKQQDSSSFARMKELAYICQEVKNPLSGIRFTNSLLESTCLTDEQKQLLETSAACEKQMLKIIRDIALESIEDGSLELDKREFLLENVINAVVSQVMIVLRDRKLQLIRDIPEEIKALAVYGDQLRIQQVLADFLMNVVRYAPSPDGWVEIHVFPRIKQISDGLTILHAEFRLVCPGEGLPPELIQDMFHNSRWVTQEGLGLSMSRKIIKLMNGEVQYVREAERCYFLVLLELPVTRRSSKTVN 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09507 1194 Pfam Phytochrome region 448 623 IPR013515 GO:0006355|GO:0009584
Vifa1g09507 1194 Pfam PAS fold 100 220 IPR013654 GO:0006355
Vifa1g09507 1194 FunFam Phytochrome 1023 1189 - -
Vifa1g09507 1194 SUPERFAMILY PYP-like sensor domain (PAS domain) 105 222 IPR035965 -
Vifa1g09507 1194 FunFam Phytochrome 440 570 - -
Vifa1g09507 1194 MobiDBLite consensus disorder prediction 17 45 - -
Vifa1g09507 1194 CDD HisKA 960 1016 IPR003661 GO:0000155|GO:0007165
Vifa1g09507 1194 SMART gaf_1 253 445 IPR003018 GO:0005515
Vifa1g09507 1194 Gene3D - 942 1022 - -
Vifa1g09507 1194 PRINTS Phytochrome signature 465 485 IPR001294 GO:0006355|GO:0009584
Vifa1g09507 1194 PRINTS Phytochrome signature 653 669 IPR001294 GO:0006355|GO:0009584
Vifa1g09507 1194 PRINTS Phytochrome signature 583 601 IPR001294 GO:0006355|GO:0009584
Vifa1g09507 1194 PRINTS Phytochrome signature 168 190 IPR001294 GO:0006355|GO:0009584
Vifa1g09507 1194 PRINTS Phytochrome signature 672 687 IPR001294 GO:0006355|GO:0009584
Vifa1g09507 1194 PRINTS Phytochrome signature 268 287 IPR001294 GO:0006355|GO:0009584
Vifa1g09507 1194 PRINTS Phytochrome signature 353 374 IPR001294 GO:0006355|GO:0009584
Vifa1g09507 1194 PRINTS Phytochrome signature 550 569 IPR001294 GO:0006355|GO:0009584
Vifa1g09507 1194 SUPERFAMILY GAF domain-like 443 621 - -
Vifa1g09507 1194 Gene3D - 440 613 IPR043150 -
Vifa1g09507 1194 ProSiteProfiles PAS repeat profile. 650 721 IPR000014 -
Vifa1g09507 1194 Gene3D PAS domain 832 941 - -
Vifa1g09507 1194 SUPERFAMILY PYP-like sensor domain (PAS domain) 655 720 IPR035965 -
Vifa1g09507 1194 NCBIfam PAS domain S-box protein 657 719 IPR000014 -
Vifa1g09507 1194 Gene3D PAS domain 104 356 - -
Vifa1g09507 1194 SMART HKATPase_4 1072 1187 IPR003594 -
Vifa1g09507 1194 CDD HATPase_Phy-like 1071 1183 IPR044767 -
Vifa1g09507 1194 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1035 1184 IPR036890 -
Vifa1g09507 1194 SMART HisKA_10 960 1024 IPR003661 GO:0000155|GO:0007165
Vifa1g09507 1194 PIRSF Phytochrome_conventional 726 1192 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Vifa1g09507 1194 PIRSF Phytochrome_conventional 34 743 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Vifa1g09507 1194 ProSitePatterns Phytochrome chromophore attachment site signature. 353 362 IPR013516 -
Vifa1g09507 1194 Gene3D PAS domain 648 807 - -
Vifa1g09507 1194 SUPERFAMILY PYP-like sensor domain (PAS domain) 833 936 IPR035965 -
Vifa1g09507 1194 SUPERFAMILY GAF domain-like 233 432 - -
Vifa1g09507 1194 ProSiteProfiles PAS repeat profile. 819 871 IPR000014 -
Vifa1g09507 1194 PANTHER OS08G0260000 PROTEIN 95 1022 - -
Vifa1g09507 1194 Gene3D - 234 596 IPR029016 -
Vifa1g09507 1194 Pfam PAS fold 819 938 IPR013767 GO:0006355
Vifa1g09507 1194 Pfam PAS fold 653 715 IPR013767 GO:0006355
Vifa1g09507 1194 Pfam His Kinase A (phospho-acceptor) domain 964 1024 IPR003661 GO:0000155|GO:0007165
Vifa1g09507 1194 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 253 425 IPR016132 -
Vifa1g09507 1194 SMART pas_2 652 719 IPR000014 -
Vifa1g09507 1194 SMART pas_2 818 888 IPR000014 -
Vifa1g09507 1194 FunFam Phytochrome 832 940 - -
Vifa1g09507 1194 ProSiteProfiles Histidine kinase domain profile. 967 1187 IPR005467 -
Vifa1g09507 1194 Pfam GAF domain 254 435 IPR003018 GO:0005515
Vifa1g09507 1194 Gene3D - 1023 1190 IPR036890 -
Vifa1g09507 1194 MobiDBLite consensus disorder prediction 1 45 - -
Vifa1g09507 1194 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 960 1017 IPR036097 GO:0000155|GO:0007165
Vifa1g09507 1194 FunFam Phytochrome 941 1022 - -
Vifa1g09507 1194 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1072 1178 IPR003594 -
Vifa1g09507 1194 CDD PAS 661 721 IPR000014 -
Vifa1g09507 1194 CDD PAS 830 938 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09507 Vifa-Chr1 1514118831 1514123528 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09507 41 1185 Histidine Kinase Gene Family AT4G16250 70.920 0.0 1716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09507 K12121 - gmx:100794865 1931.76