Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09504 ATGGCGTTCTGGTGGTCCTTGCTCGTTCTAGCTTTCGCTTTCGCTGTCTGCAAATTCCTTCTCATGCTCATTCCTCCCAAGGTTCCTTCAATCGATGTTGACGCTTCCGATGTGCTGGAAGATGGAAACCAATCGCAGGAGAATAGCTTCATATACGTGCCTCCGAGGGGAACGGCGCAGCAATCAGGCAAGAAAGTTCAGTGCTATGAGCCTGCTACCATGAAATATTTGGGATATGTTCCTGCTTTGACACCAGATGAGGTCAAGGAGCAAATTGAAAAAGTACGGAAGGCACAAAAAATGTGGGCAAAGACCAGCTTCAAGCAAAGGCGCCAATTTTTGCGTATACTGTTGAAGTATATAATTAAACATCAAGCACTAATTTGCGAGATATCGTCACGTGATACTGGAAAAACAATGGTAGATGCCTCTCTAGGAGAAATAATGACAACATGTGAGAAGATCAATTGGCTACTGTCAGAGGGTGAACAATGTCTGAAACCTGAGTACAGATCCTCTGGAAGAGCAATGCTTCATAAAAGATCCAGAGTAGAATTTCACCCCCTTGGAGTTATTGGGGCCATTGTGTCATGGAACTATCCCTTCCATAATATTTTTAACCCTATGCTAGCAGCAGTTTTTTCTGGAAATGGCATTGTGATTAAGATATCAGAACATGCAAGTTGGTCTGGATGCTTTTACTTCCGGATCATCCAATCAGCCCTTGCTGCCATAGGAGCTCCAGAGGACCTTGTTGAGGTGATAACAGGGTTTGCTGAAACAGGAGAAGCACTGGTGTCTTCTGTTGATAAAGTCATTTTTGTTGGATCTCCTGGGGTTGGTAAGATGATAATGAAAAATGCTGCTGAGACACTTATACCAGTTACACTAGAGCTTGGTGGAAAAGATGCATTTATTGTTTGTGAAGATGTAGATGTGGATCATGTTGCTCAAATTGCTGTCAGGGCTTTTCTTCAGTCAAGTGGGCAGAACTGCGCTGGAGCTGAACGATTTTATGTCCATAGGAACATTTATCCATCTTTTGTCAGCAAAATTACCAAAATCATAAAATCTGTTACGGCTGGTCCACCACTTGCTGGGAAGTATGATATGGGAGCTTTATGCATGCATGAGCATTCTGAAAAGCTTGAAGGTCTTGTAAATGACGCTTTAGACAAAGGAGCTGAAATTGTTGCTCGTGGAAGTTTTGGACATATAGGTGAAGACGCTGTTGATCAGTATTTCCCCCCCACTGTGATTGTAAATGTGAATCACTCCATGAGATTGATGCAAGAAGAGGCATTTGGACCTATCATGCCAATAATGAAGTTTAGCTCTGATGAAGAAGTTATCAAGCTTGCTAATGACTCAAAATATGGGCTCGGCTGTGCTGTTTTCTCAGGAAGTCAAAGTCATGCCCGAGAGATAGCTTCTCATATACATTGTGGGGTGGCTGCAGTTAATGATTTTGCATCAAATTACATGTGTCAGTCCCTGCCTTTTGGGGGAGTGAAACACAGTGGATTTGGACGTTTTGGTGGTGTGGAAGGCCTGCGAGCATGCTGCCTTGTAAAATCAGTTGTTGAAGATAGATGGTGGCCATTCATCAAGACAAAAATACCTAAGCCTATTCAGTATCCCGTGGCAGAAAATGGATTTGAGTTTCAGGAGTCACTCGTTGAAGCACTATATGGGCTTAGCATATGGGATCGTTTGCAAGCATTGGTAACCGTTTTGAAAATGCTTACCGAGCAGAATAAGAAGGAGAAATGA 1773 0.4292 MAFWWSLLVLAFAFAVCKFLLMLIPPKVPSIDVDASDVLEDGNQSQENSFIYVPPRGTAQQSGKKVQCYEPATMKYLGYVPALTPDEVKEQIEKVRKAQKMWAKTSFKQRRQFLRILLKYIIKHQALICEISSRDTGKTMVDASLGEIMTTCEKINWLLSEGEQCLKPEYRSSGRAMLHKRSRVEFHPLGVIGAIVSWNYPFHNIFNPMLAAVFSGNGIVIKISEHASWSGCFYFRIIQSALAAIGAPEDLVEVITGFAETGEALVSSVDKVIFVGSPGVGKMIMKNAAETLIPVTLELGGKDAFIVCEDVDVDHVAQIAVRAFLQSSGQNCAGAERFYVHRNIYPSFVSKITKIIKSVTAGPPLAGKYDMGALCMHEHSEKLEGLVNDALDKGAEIVARGSFGHIGEDAVDQYFPPTVIVNVNHSMRLMQEEAFGPIMPIMKFSSDEEVIKLANDSKYGLGCAVFSGSQSHAREIASHIHCGVAAVNDFASNYMCQSLPFGGVKHSGFGRFGGVEGLRACCLVKSVVEDRWWPFIKTKIPKPIQYPVAENGFEFQESLVEALYGLSIWDRLQALVTVLKMLTEQNKKEK 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09504 590 FunFam aldehyde dehydrogenase 22A1 65 319 - -
Vifa1g09504 590 Pfam Aldehyde dehydrogenase family 61 527 IPR015590 GO:0016491
Vifa1g09504 590 SUPERFAMILY ALDH-like 60 529 IPR016161 GO:0016491
Vifa1g09504 590 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 500 IPR016163 GO:0016620
Vifa1g09504 590 CDD ALDH_F15-22 69 531 - -
Vifa1g09504 590 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 325 336 IPR016160 GO:0016491
Vifa1g09504 590 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 65 525 IPR016162 GO:0016491
Vifa1g09504 590 FunFam Aldehyde dehydrogenase 22A1 305 500 - -
Vifa1g09504 590 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 59 527 - -
Vifa1g09504 590 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 297 304 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09504 Vifa-Chr1 1512676733 1512695093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09504 1 586 Aldehyde Dehydrogenase Gene Family AT3G66658 81.399 0.0 1033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09504 - - gmx:100797873 1110.52