Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09500 ATGGAAAACTTGTACAATTTTGGTGACTTCAGTTTCAGTGCAGTTGAAGATAAACTTAGTTCATGCAATGATATTTTCTGGGAAACCAAGAAACTTCATGAAGTAAAAAATGTTCAATTTTCTGTAGCAGAAGATCTAGGAGAGTTTAATGGAACAGAGTCTCTATGCTCTAATTTTGGTTTCTTTCAAGATGATCCATCACATGAAGACGGGTTTCTTCTTTCGACCAATCAACAAAAGCTTCAAGATTATGAAACTTCCGATAACCTACAATTCGACATGGTTAACTTTGATGAACAACTATGTCCAACAAATGTTCTTCCAATTTGTGCCACCAAAAATGAGGAACAATACTACCAAACTCCTTTACCGCCGGTTGAGATATTGAAGCATTACGGCAAAGGATTCAAGAAGTTATTGTTACCGGATGAAGGAAAAATCCTTCATCCGGTTAATGATTTTGATTTAGTCACAAACAACGAAAATGAGAGAAAGTTGTCAACTGCAGATATCATGAAGGTAGCTGGAACGAGATTCATACAATCATCTTTGTCGGAATCTGCATCATCAGGTTTGATTCTTAATCACCCTTTTGGTTTTAGTTTCTCTGGTTTATCAGATGAAGAGAAAGAAGATGTTTCACTTGCTGAATCACTCTTGGCTTGTGCTGAAAAAGTTGGATATCAACAATTTGAACGCGCTAGATTTTTTTTACCACAAATCGAGTCTTTATCTTCGAAGACAGGTAATCCGGTTAAGCGTCTAGTTCATTATTTTGCCAAAGCTCTTCGCCAGAGAATCGACAGAGAAACAGGTAGAGTTTGTGTTGACAATGTGCAAAAGGCGGAGTCTTTATTTGATCCTGAAGAGGACGCCAAGGATCTAAATCCGACCCTTCTCGCCTTTATCGAAGATCTTCCGTTTTGTAAAATTTCAATGTTCACATGTGTACAAGCTTTAATAGAGAATCTTAAAGATGCAAAGAAGATTCATGTTATTGATCTCGAAATTCGGAAAGGGTTACAATGGACAATCCTAATACAAGCACTTCAATCGAGAAATGAATGTCCGCTCGAGCTTTTAAAGATAACAGCTATTGCGAGCGGAAACATAGACACGTCGAAGCAGATAGTCGAGGAAACTGGTAAAAGATTGAAAGATTTTGCGCAAAGTTCGAATGTACCTTTCTCCTTCGAAATAGTTGTTGTATCTGATTTATTACATCTAAGAGAAGATCATTTTAAGATAGACTCTGACGAAACAATTGCAGTTTATTCTCAATTTGCGCTGCGAAGTAAGATTCATCAATCAGACCAACTCGAAACAATCATGAGAGTTATTAGAACTATAAACCCTATAGTAATGGTTGTCACTGAGATTGAAGCTAATCATAATTCTAAGTCTTTTGTGAACCGTTTCATCGAAGCGCTTTTTTATTTTAGTGCATTTTTCGATTGTTTAGAGGATTGTATGAAAGGTGACCAGAAAAACAGAATGATTCTAGAATCGATGTATTTTAGTCACGGTATAAGGAATACTGTGGCGGAAGAAGGAGCAGAAAGAAAGAGTAGAAATGTGAAGATTGATGTGTGGAGAGCATTTTTTACGAGATTTGGGATGGTGGAAACAGAATTGAGTATGATGAGTTTGTATCAAGCCGAATTGGTTGCTAAAAGATTTGCTTGTGGAAATTCTTGCACATTTGATATGAATGGACAATGTCTTGTTATTGGGTGGAAAGGGACACCAATTAACTCTGTTTCTGTTTGGAAGTTTATTTGA 1782 0.3664 MENLYNFGDFSFSAVEDKLSSCNDIFWETKKLHEVKNVQFSVAEDLGEFNGTESLCSNFGFFQDDPSHEDGFLLSTNQQKLQDYETSDNLQFDMVNFDEQLCPTNVLPICATKNEEQYYQTPLPPVEILKHYGKGFKKLLLPDEGKILHPVNDFDLVTNNENERKLSTADIMKVAGTRFIQSSLSESASSGLILNHPFGFSFSGLSDEEKEDVSLAESLLACAEKVGYQQFERARFFLPQIESLSSKTGNPVKRLVHYFAKALRQRIDRETGRVCVDNVQKAESLFDPEEDAKDLNPTLLAFIEDLPFCKISMFTCVQALIENLKDAKKIHVIDLEIRKGLQWTILIQALQSRNECPLELLKITAIASGNIDTSKQIVEETGKRLKDFAQSSNVPFSFEIVVVSDLLHLREDHFKIDSDETIAVYSQFALRSKIHQSDQLETIMRVIRTINPIVMVVTEIEANHNSKSFVNRFIEALFYFSAFFDCLEDCMKGDQKNRMILESMYFSHGIRNTVAEEGAERKSRNVKIDVWRAFFTRFGMVETELSMMSLYQAELVAKRFACGNSCTFDMNGQCLVIGWKGTPINSVSVWKFI 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09500 593 Pfam GRAS domain family 216 591 IPR005202 -
Vifa1g09500 593 ProSiteProfiles GRAS family profile. 206 591 IPR005202 -
Vifa1g09500 593 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 182 581 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09500 Vifa-Chr1 1511498521 1511500302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09500 205 592 GRAS Transcription Factor Family AT3G03450 30.380 1.25e-57 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa1g09500 GRAS 2.1e-92 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09500 - - gmx:100798926 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09500 1 1511498521 1511500302 Vifa1g09500 1 1511498521 1511500302 ECH