Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09473 ATGGGAGTTGAAAAAGAAGGGACTAAAGGTGGAGGTAGTTTTTTCCACTTATTTGATTGGACCTCGAAATCGCGTAAGAAGTTATTTGCATCCAAGTCAGATTTACCAGAGTGTTTGAAACAGGAAAGAAAATCCAATCACAATGGGGCAATGGGACATCCCTATCTGGTGGATGAAGATGAAAATGGTGTAGGGGAATTTGTTAGAGGAAGTTGTGATCATAGTTATGCTTCATCTGTTACAAGTGATGAAACATCTGGAACAAGAGCTCCTAATGTAGTTGCGAGGCTTATGGGATTAGATTCTTTGCCTTCTTCCGGTTTCTCTGATCCCTACGCTTCTCCATATTTTGATACCAGATCCCTTCAAGACGAGGCTCAGTACCTTAGGAAAAATCATGAGGAACTGAGAAACTCGAAGGGATCTGGTATAATGGAGGCTCAACCTCAGAAGACGATTATTAGGCCAATTGAGAAGTTTCAGAAAGAAGTGTTACCTCCAAAATCAGCCAAGTCAATTCCCGTTACACACCATAAACTTTTGTCCCCTATAAAGAATCCTGGCTTTGTTCCGTCCAACAATGCTGCTTATATAATGGAGGCTGCTGCGAGAATTATGGAACCTGGATCCTCCCAAGCGAAGGCTAAAGCACATATGGCATCATCAACAGTCTCACTGAGGGTTAAAGATCTTAGAGATAAGTTAGATTCTTCACAAAAAGGACCTTTAATTGGGACATCTTCTGTAGCTTTTAAGACTCGAGAACTGAAAGAAAGAAGAGACATTTCTCAAAGAACAACAAGCAGAGTTTCAGAACCTTCTCAAAGGTCATCATCATCAGTCGAGTTGAATGCTGCAAAGTATTTAAAGGGACAGTCTTTGAACAGAAGCTGGAATGGAACCGCGGAAACATCCATCAAGTCTCCTACACATGCAGAAGAAGATTCTTCTTTGAAGAATAAGGAGAAATCTGCTTCTTTGAACAGAAGCTGGAATGGAACTACGGAAACATCCGTCAAGTCTCCTACACATGCAGAAGAAGATTCTTCTTTGAAGAATAAGGAGAAATCTGCTTCTTTGAACAGAAGCTGGGATAGAACTGCAGAAACATCCGTCAAGTCTCCTCCACATGCAGAAGAAGATTCTTCTTTGAAGAATAAGGGGAAATCTGTTTCGCTTGCAATCCAAGCAAAAGTGAATGTTCAAAGAAGGGAAGGTTTGAGTTCTACCGGTGGCAGAAGTTTGATGAACCAAAAAGAGCATGTCGACACAAAATCAAATCACCCACCTAAGACAAATGCTCAGAAAAATCTGCATAGGAAATCTTCTGGCCTGAATTCTTCTAATGTTCTCAGGCAGAATAATCTGAAACAGAACCATTCAATGGATACGAATGACAAGTCATTACCATCTAAGCCATTGGTTTCCAATTCACAAGGTAGGAAAGTTATGACTGGAGATTCCTCTTACGGACGGCATAGAAGCTCAAGTGGTAAATACACCGCGAAATCTAAAACCGGATTGAAAAAGTCAGCCGTGGAGGTGACAGATAGCGAAAACGAAATTCTATACACCCGCACAAATAATTTTCCTAGAAAGAAAAGGACCACAGACAAGGACTGGAATGACAGAGTTGTTGATAATTTATTCATCGACAAAACTCCAAAGCCTGTTAAGCCTGAGGAAGTGAAAAAGAAAGACATGGATGTAATTTCCTTCACATTTACCACACCATTAACAAGGAGCAGCAATCCAGGTTTCGAGACACCTCGGCAAGGTGGGAAGAATACTAATGATCTTTCATTGGATCAACGCATTAAAAGAGTGTTGCTCGACGCAGACAGTTCGAGGTCTCCAATAGGATATAATGTAATTGGTGGTGATGCCTTAGGTATACTTTTAGAACAGAAACTGAGGGAATTGACAAGTGGAGTTGAAAACTCATCTTCCAGTGATGTTTCTAAAGTGAGGCAACTTTCCAATTCTGCACCAATGTCAATTGATCAAGTAACCAACTTTAATATAGTAAACCTCAATCCAAGACTGCAGCTGAAGAAAGACCAAGATATGTCGTTTTCGGACAGTCTAAGCAGTAGCCGCAATCATCCAGAATCATCATTGAAACAACATAAATCATGGGGTGATGAGATGGAACCACTGTCGTCCAATTGCCGACAACCAAGTCCTGTTTCTGTTCTTGAACCGTCTTTCTCAATCGAAAGTTGTGAATCCTCGATGAGTATGGACGTTACTAGTACTGAAGGAAGCAAGATGTTTTCATCTATTCAAGCTCAAGAGATCCATGGCTTCAATTTTTCGAGGAAATTCTATCCTACCGAATCTGATGCAGAGTTATCTGATTCAGCTTCTTCAACCTCAACCAGGACTATGATTAAGAAGCACGCAAATACATTTTCTATGAAGTTTGGAAGATTATCAAGTACATGGGAGCTAGAATATGTGAAAGAGATACTATGTAATGTTGAGTTGATGTATATAGATTTTTCCCTCGGCCGAGCACGCGAGGTTGTGAACTCTCACCTCTTCAATCAGTTGGAAAGCAGAAGGGGAGGTTACAAGTGTGACGATGAGTCGAGGATGGAAAGGAAAGTTATATTTGACTGTGTGAGTGAATGTTTGGATTTGAGATGCAGGAGTTATGTAGGAGGAGGGTACAAAATGTGGACTAAAGGGTTTGAAATGGTGAGAAGAAAAGATTGGTTGGCAAAAGATGTGTACAAGGAAATTTTGGGGTTGAGAGGGATGAGAGATTTAATGGTGGAAGAACTTGTGGACAAGGATATGAGTAACAAATATGGAAAGTGGTTGGAATTGGATTATGAGGTTGATGCTTTTGAATTTGGTGAAGAAGTTGTGGATCAAATTTTTGATTCTTTGGTTGAGGATGTTGTCTATGAAATGTTGCAAGTTTAA 2934 0.4035 MGVEKEGTKGGGSFFHLFDWTSKSRKKLFASKSDLPECLKQERKSNHNGAMGHPYLVDEDENGVGEFVRGSCDHSYASSVTSDETSGTRAPNVVARLMGLDSLPSSGFSDPYASPYFDTRSLQDEAQYLRKNHEELRNSKGSGIMEAQPQKTIIRPIEKFQKEVLPPKSAKSIPVTHHKLLSPIKNPGFVPSNNAAYIMEAAARIMEPGSSQAKAKAHMASSTVSLRVKDLRDKLDSSQKGPLIGTSSVAFKTRELKERRDISQRTTSRVSEPSQRSSSSVELNAAKYLKGQSLNRSWNGTAETSIKSPTHAEEDSSLKNKEKSASLNRSWNGTTETSVKSPTHAEEDSSLKNKEKSASLNRSWDRTAETSVKSPPHAEEDSSLKNKGKSVSLAIQAKVNVQRREGLSSTGGRSLMNQKEHVDTKSNHPPKTNAQKNLHRKSSGLNSSNVLRQNNLKQNHSMDTNDKSLPSKPLVSNSQGRKVMTGDSSYGRHRSSSGKYTAKSKTGLKKSAVEVTDSENEILYTRTNNFPRKKRTTDKDWNDRVVDNLFIDKTPKPVKPEEVKKKDMDVISFTFTTPLTRSSNPGFETPRQGGKNTNDLSLDQRIKRVLLDADSSRSPIGYNVIGGDALGILLEQKLRELTSGVENSSSSDVSKVRQLSNSAPMSIDQVTNFNIVNLNPRLQLKKDQDMSFSDSLSSSRNHPESSLKQHKSWGDEMEPLSSNCRQPSPVSVLEPSFSIESCESSMSMDVTSTEGSKMFSSIQAQEIHGFNFSRKFYPTESDAELSDSASSTSTRTMIKKHANTFSMKFGRLSSTWELEYVKEILCNVELMYIDFSLGRAREVVNSHLFNQLESRRGGYKCDDESRMERKVIFDCVSECLDLRCRSYVGGGYKMWTKGFEMVRRKDWLAKDVYKEILGLRGMRDLMVEELVDKDMSNKYGKWLELDYEVDAFEFGEEVVDQIFDSLVEDVVYEMLQV 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09473 977 MobiDBLite consensus disorder prediction 402 511 - -
Vifa1g09473 977 MobiDBLite consensus disorder prediction 299 389 - -
Vifa1g09473 977 MobiDBLite consensus disorder prediction 428 504 - -
Vifa1g09473 977 MobiDBLite consensus disorder prediction 402 417 - -
Vifa1g09473 977 MobiDBLite consensus disorder prediction 308 322 - -
Vifa1g09473 977 MobiDBLite consensus disorder prediction 687 731 - -
Vifa1g09473 977 MobiDBLite consensus disorder prediction 267 282 - -
Vifa1g09473 977 MobiDBLite consensus disorder prediction 372 386 - -
Vifa1g09473 977 Pfam DUF761-associated sequence motif 78 109 IPR032795 -
Vifa1g09473 977 Coils Coil 119 139 - -
Vifa1g09473 977 MobiDBLite consensus disorder prediction 687 703 - -
Vifa1g09473 977 MobiDBLite consensus disorder prediction 341 362 - -
Vifa1g09473 977 MobiDBLite consensus disorder prediction 233 282 - -
Vifa1g09473 977 MobiDBLite consensus disorder prediction 252 266 - -
Vifa1g09473 977 Pfam Domain of unknown function (DUF4378) 817 969 IPR025486 -
Vifa1g09473 977 MobiDBLite consensus disorder prediction 323 340 - -
Vifa1g09473 977 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 339 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09473 Vifa-Chr1 1502899266 1502902638 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09473 392 975 TRM (TON1 Recruiting Motif) Superfamily AT3G58650 29.752 3.22e-47 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09473 - - tpra:123885644 1483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09473 1 1502899266 1502902638 Vifa1g09473 1 1502899266 1502902638 ECH