Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09469 ATGACAAGCCGCGATTTGAGACTGAAGGCGACAAATGAGTTGCTTAACAATATGCGTGTGATTAAGTTTCAAGCGTGGGAAGAGTATTTCGGTAACAAAATTCAACAGTTTCGTGAAGCCGAGCATGGATGGATTGGGAAATTCTTGTACAATTTTGCTGTTAACTTGGGCGTATTGAATGCTGCACCATTAATTGTAACTGTTCTTACCTTTGGAACTGCAACTTTTATTGGAATTCCTTTGAATCCTGGCACTGTTTTCATAATAACTTCGATTATCAAGATACTTCAAGAACCTTTGAGGACTTTTCCTCAGGCTCTTGTGGCGGTTTCTCAAGCAACAATATCTTTAGGGAGGTTGGATGAGTTCATGATGAGCAAGGAAATGGATGAGAATGCAGTGCAAAAAGAGGAGAGTTGTGACGATGATGTAGCAGTGGAGATAAAAGATGGGAAATTCTCATGGGATGATAACGATGAGAATGATGCTTTGAGAGTTGATGAGTTGGAAATTAAGAAAGGGAATCATGCTGCTGTTGTAGGAACTGTTGGTTCAGGCAAGTCTTCATTATTGGCTTCTTTGTTGGGAGAAATGTTCAAGATCTCAGGAAAGGTAAGAGTTTGTGGGACGACAGCGTATGTAGCACAAACATCATGGATTCAGAACGCAACCATCAAAGAAAACATACTGTTTGGTTTACCAATGAACATGGACAAGTATAGGGAAGCTTTAAGAGTATGCTGTCTTGAGAAGGATCTTGAAATGATGGAATATGGTGATGAGACTGAGATTGGAGAGCGCGGAATAAACCTCAGTGGTGGTCAGAAACAACGCGTACAGCTTGCTAGAGCTGTATATCAGGACACTGACATCTATCTCCTTGATGATGTATTCAGTGCTGTTGATGCTCAAACAGGATCTTTTATTTTTAAGGAATGTATCATGGGAACTCTCAAAGATAAGACAGTTTTACTTGTAACCCACCAAGTTGATTTCCTGCATAATGTTGACTATATAATGGTGATGCGTGAAGGGAGAGTAGTGCAAAGTGGAAAGTATGAGGAACTTCTCAAAGCAGGCCTAGATTTTGGTGCACTTGTAGCAGCTCATGAATCCTCGATGGAGATAGCAGAAACAGGAGACAAAACAGTTGATGATTCAGCTCAATCTCCAATACTTGCTCGCATCGCATCGAAAGAAAAAGAAAGCGGAGTTGAAAAGCAGTCTTCTCAAGATCAATCTAATAAAACTGCAGCAAAGCTCATTGAAGATGAGGGAAGAGAAACTGGACATGTGAGCATTAAAGTATACAAACAATATTTCACAGAAGCATTTGGATGGTGGGGAATAGCACTTGTAGTAGCAATGTCAGCGGGTTGGGTGTTGTCATTTTTGGCTGGTGACTATTGGCTAGCAATTGCTACATCAGATGGTTCTGGCATTCCTTCATTTACTTTCATTGCCGTCTATGCTGCTATATAG 1482 0.4062 MTSRDLRLKATNELLNNMRVIKFQAWEEYFGNKIQQFREAEHGWIGKFLYNFAVNLGVLNAAPLIVTVLTFGTATFIGIPLNPGTVFIITSIIKILQEPLRTFPQALVAVSQATISLGRLDEFMMSKEMDENAVQKEESCDDDVAVEIKDGKFSWDDNDENDALRVDELEIKKGNHAAVVGTVGSGKSSLLASLLGEMFKISGKVRVCGTTAYVAQTSWIQNATIKENILFGLPMNMDKYREALRVCCLEKDLEMMEYGDETEIGERGINLSGGQKQRVQLARAVYQDTDIYLLDDVFSAVDAQTGSFIFKECIMGTLKDKTVLLVTHQVDFLHNVDYIMVMREGRVVQSGKYEELLKAGLDFGALVAAHESSMEIAETGDKTVDDSAQSPILARIASKEKESGVEKQSSQDQSNKTAAKLIEDEGRETGHVSIKVYKQYFTEAFGWWGIALVVAMSAGWVLSFLAGDYWLAIATSDGSGIPSFTFIAVYAAI 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09469 493 FunFam ABC transporter C family member 4 129 388 - -
Vifa1g09469 493 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 146 369 IPR003439 GO:0005524
Vifa1g09469 493 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 491 - -
Vifa1g09469 493 SUPERFAMILY ABC transporter transmembrane region 4 126 IPR036640 GO:0005524|GO:0016020
Vifa1g09469 493 SMART AAA_5 173 346 IPR003593 GO:0016887
Vifa1g09469 493 Gene3D - 140 372 IPR027417 -
Vifa1g09469 493 Pfam ABC transporter transmembrane region 2 100 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g09469 493 CDD ABCC_MRP_domain1 146 346 - -
Vifa1g09469 493 ProSitePatterns ABC transporters family signature. 271 285 IPR017871 GO:0005524|GO:0016887
Vifa1g09469 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 365 IPR027417 -
Vifa1g09469 493 Gene3D ABC transporter type 1, transmembrane domain 1 132 IPR036640 GO:0005524|GO:0016020
Vifa1g09469 493 Pfam ABC transporter 168 297 IPR003439 GO:0005524
Vifa1g09469 493 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 112 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09469 Vifa-Chr1 1502854550 1502856410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09469 146 398 Calmodulin-binding Proteins AT2G36910 30.325 1.70e-28 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09469 - K05665 gmx:100804807 786.178