Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09463 ATGAGTAGTACTTCATCTAAAAACCCTATAGACAACAATGAAGATAAACCTCCCTCCTTATCTTTACCAACACTAAAGCTATTTGGTTTCTCACTAACACCTTCTAACACCCTTTCTTTTAACAATAAGAGATTTAGATGTTATTTTTGTCGTCGTGAATTTACCAATTCTCAAGCCTTAGGAGGCCATCAAAACGCACACAAAAGAGAACGCCAAAGAGCACACTTTCTTTCCATTCTTCCGCATCATCAACGCTTTGTAGCATCTTCATCTTATCATCCTATGATAGCACAGCATGGAGCACCAAGAGCAGTGTTTTTTCATCCACGCCGATCGCCGGGTGCAATATGGGAGAGACAAGCTTATGAAGAAGGGCCTAATGAGGTTCATTTTGATGCAGGTGCATCCAGAAATAATGGACAAGTACACAATAATATTATTGATGGTGATGTTGATCTTAACTTGAGTCTAGCTTGTGTACCTATTAATTCCAAGGACAAATAG 504 0.3909 MSSTSSKNPIDNNEDKPPSLSLPTLKLFGFSLTPSNTLSFNNKRFRCYFCRREFTNSQALGGHQNAHKRERQRAHFLSILPHHQRFVASSSYHPMIAQHGAPRAVFFHPRRSPGAIWERQAYEEGPNEVHFDAGASRNNGQVHNNIIDGDVDLNLSLACVPINSKDK 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09463 167 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Vifa1g09463 167 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Vifa1g09463 167 PANTHER ZINC FINGER PROTEIN 5 30 158 IPR044299 GO:0010090
Vifa1g09463 167 SUPERFAMILY beta-beta-alpha zinc fingers 41 72 IPR036236 -
Vifa1g09463 167 Gene3D Classic Zinc Finger 28 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09463 Vifa-Chr1 1501823741 1501824244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09463 24 113 C2H2 Transcription Factor Family AT1G67030 37.864 1.14e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09463 - - tpra:123887517 231.491