Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09462 ATGTCGGACGGAGCCAGTCTTGTGCTGGAATCATCTGAAAACGGGACAGATTTGTCTCAGGATGATATTGGCACTGTTGAGGAAACGCCAGAGGAAACAATTTTGTCAAGACAAACTTCTGTTAACCTTGTTCCTTTTATTGGTCAAAGATTTGTCTCTCAAGAAGCTGCGTATGAGTTTTATTGCAGTTTTGCGAAACAATTTGGTTTTTCTATTAGACGACACCGCACCCGAGGGAAAGATGGGGTTGGCCGAGGAGTAACAAGGAGGGATTTTACTTGCCATCGTGGTGGGTTTCCCCAAAATAAACATTCTGAAGATGTGGGGAAGGTGCAAAGGAACCGTAAATCATCTCGCTGTGGTTGCCAAGCATATTTGCGTATTGTGAAAAGGGCGGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGAAACATCCATAATCATGAGTTGTTGAAATCCAATGAGGTGCGTCTTCTTCCATCGTACTGTCCGATATCTCCTGATGATAAGAGCCGCATATGCATGTTTGCCAAAGCTGGAATGTCGGTAAGACAAATGTTAAGATTAATGGAGCTAGAGAAGGGCATCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTGAGAAACTTGTTGCAGTCTTTTAGAAATGTGGATAAAGATAATGATGCTATTGATATGATTGCAATGTGTAAGAGATTAAAAGATGAAAATCACAACTTCAAGTATGATTTCAAGATAGATAATAATAACAGGCTTGAGTACATTGCATGGTCCTACGGCTCATCAATTCAATCATATGAAGTATTTGGAGATGCTGTGGTTTTTGATACAACTTACCGAGTAGAGGCTTATGACATGCTGTTGGGAATTTGGCTTGGAGTCGACAATAATGGAATGATATGTTGCTTTAGTTGCGCACTTCTAAGGGACGGAAATATGCCATCTTTTTCATGGGCTTTAAAGGCTTTCTTGAGCTTCATGAAAGGAAAGGCACCACAAACAATACTGACTGATCATAACATGTGGCTGAAAGAAGCTATTGCTGTTGAAATGCCTGAAACTAAACATGCCTTTTGTATATGGCATATTCTCTCCAAATTCTCTGACTGGTTTTCTTTACTTCTTGGATCACAATATGATGAGTGGAAAGCTGAGTTCCATCGGCTCTACAATTTGGAAATGGTGGAAGATTTCGAAGAAGGCTGGAGGCAAATGGTCGATAACTACGGACTCCATGCAAATAAACATATTATTAGCCTTTACTCATTAAGGACATTTTGGGCTTTACCATTCTTGAGGATATACTTCTTTGCAGGATTGACCAGTACAAGTCAGACCGAGTCCGTTAACGTTTTCATCCAACGATTCTTAAGTGCACAATCTCAACCAGAACGCTTTTTAGAGCAAGTGGCTGATATTGTTGATTTCAATGACCGAGCCGGAGCAAAGCAAAAGATGCAAAGGAAAACACAGAAAGTGTGCCTCAAAACTGGTTCACCTATAGAATCCCATGCTGCCACTATACTTACTCCTTATGCCTTGAGCAAACTCCAGGAAGAGTTAGTTTCGGCACCACAATATGCATCCCTTATGGTTGATGAAGGTTCTTTCCAGGTCAGACACCACTCCCAGACAGATGGAGGTTGCAAAGTACTTTGGCTTCCATGTCAAGAGCACATCAGCTGCAGCTGCCATCTGTTCGAATTTTCAGGCATCTTATGTAAACATGTGCTACGTGTCATGTCAACTAATAACTGTTTTCACATCCCTGATCAATATTTACCGCTTCGATGGCGAAGCATTGGTTTGTCTTCTCTTAACCATTTTCAGGGTGCAAGTAGCACGGATCAGCCTGAGAGGATACAGTTTTTGGAATCTCTGGTTTCAACCCTTCTCATGGAATCCGTCGAAACCGATGAACGCCTTGATGTTGCTTGTGATCAAGTTTCTGTAGTTATATCGCGTATCAAAACTCTTCCCAGGTCATCACATGGGGTAAATGACATTGCATTTAGTTATGCATCAGATTCATTGATCTTGCCAGAGGTAGAAGATACCGATGAAATGATTAACGGTTTTACAATTGCAAATCCCCATGATTCTATGGGTTTAGGCAAGTTAAAGGAGAGAAGGGTAAGAGATGGAGTTGATCTTACTCGAAAACGTAGGCAGTTCTCAGCACCATTGTGTGTACAATATGGACATGATGGATCTGATTGCTCAATGATGGCTGATGATAATATTAGTGAAGATGCATTAGGGTATATGTAG 2280 0.4105 MSDGASLVLESSENGTDLSQDDIGTVEETPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQFGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQNKHSEDVGKVQRNRKSSRCGCQAYLRIVKRADFDVPEWRVTGFRNIHNHELLKSNEVRLLPSYCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDKDNDAIDMIAMCKRLKDENHNFKYDFKIDNNNRLEYIAWSYGSSIQSYEVFGDAVVFDTTYRVEAYDMLLGIWLGVDNNGMICCFSCALLRDGNMPSFSWALKAFLSFMKGKAPQTILTDHNMWLKEAIAVEMPETKHAFCIWHILSKFSDWFSLLLGSQYDEWKAEFHRLYNLEMVEDFEEGWRQMVDNYGLHANKHIISLYSLRTFWALPFLRIYFFAGLTSTSQTESVNVFIQRFLSAQSQPERFLEQVADIVDFNDRAGAKQKMQRKTQKVCLKTGSPIESHAATILTPYALSKLQEELVSAPQYASLMVDEGSFQVRHHSQTDGGCKVLWLPCQEHISCSCHLFEFSGILCKHVLRVMSTNNCFHIPDQYLPLRWRSIGLSSLNHFQGASSTDQPERIQFLESLVSTLLMESVETDERLDVACDQVSVVISRIKTLPRSSHGVNDIAFSYASDSLILPEVEDTDEMINGFTIANPHDSMGLGKLKERRVRDGVDLTRKRRQFSAPLCVQYGHDGSDCSMMADDNISEDALGYM 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09462 759 Pfam SWIM zinc finger 562 585 IPR007527 GO:0008270
Vifa1g09462 759 Pfam MULE transposase domain 276 368 IPR018289 -
Vifa1g09462 759 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g09462 759 Pfam FAR1 DNA-binding domain 59 153 IPR004330 -
Vifa1g09462 759 MobiDBLite consensus disorder prediction 1 25 - -
Vifa1g09462 759 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 39 603 IPR031052 GO:0006355
Vifa1g09462 759 ProSiteProfiles Zinc finger SWIM-type profile. 540 588 IPR007527 GO:0008270
Vifa1g09462 759 SMART 26again6 563 590 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09462 Vifa-Chr1 1501565734 1501569881 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vifa1g09462 FAR1 2e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09462 - - gmx:100778434 1381.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09462 1 1501565734 1501569881 Vifa1g09462 1 1501565734 1501569881 ECH