Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09460 ATGTCGCTCAGACCCAATGCTAGAACTGAAGTTCGTCGCAACCGTTACAAGGTTGCCGTCGACGCCGATGAAGGTCGCCGGAGAAGAGAGGACAATATGGTTGAGATCCGGAAAAGTAAGCGTGAAGAGAGTCTATTGAAGAAGAGACGTGAAGGTCTTCAAGCTCAGTTCCCTACTCCTCTTCAGTCTTCCTCCATTGTCGAGAAAAAGTTAGAGAGTCTTCCTGCAATGATTGCTGGGGTTTTATCGGATGATAATACTCAACAACTCGAAGCAACTACTCAATTTCGGAAATTGCTTTCAATTGAACGCAGCCCTCCAATCGAGGAAGTAATTCAATCGGGTGTTGTTCCTCGTTTTGTTGAATTTCTAGTGAGGGAGGATTTTCCTCAACTTCAGTTTGAGGCTGCTTGGGCACTCACAAACATAGCTTCTGGAACTTCTGAGAACACTAAGGTAGTAATTGATCATGGGGCAGTACCAATATTTGTCAAGCTACTTAGTTCACCTAGTGATGATGTTCGGGAACAGGCTGTGTGGGCATTGGGAAACGTTGCCGGTGACTCCCCTAGGTGCCGTGATCTTGTTCTAAGCAATGGTGCCCTGATCCCGCTGTTATCCCAGTTGAATGAACAAGCAAAGCTTTCAATGCTGAGAAATGCCACATGGACCCTGTCAAACTTCTGTAGGGGCAAGCCACAACCTCCATTTGATCAGGTGAGGCCTGCGCTCCCTGCTCTTGAGCGTTTGGTTTTTTCCAGTGATGAAGAAGTCTTGACAGATGCATGCTGGGCTCTCTCATATCTCTCTGATGGGACAAATGACAAAATTCAAGCTGTGATTGAGGCAGGTGTATGTGGCAGACTTGTGCAGCTCCTTCTGCACCCATCTCCTTCAGTGCTGATTCCTGCACTTCGCACGGTGGGAAATATTGTAACTGGAGACGATATGCAGACTCAGGCTATTATCAACCATGGTGCACTCCCATGCCTTTTGAGCCTGTTGACCCATAATCATAAGAAAAGTATCAAGAAAGAAGCTTGCTGGACTATATCAAACATCACAGCCGGAAACAAAGAGCAGATACAGGCTGTTATTGAAGCTGGTCTGATTGCTCCCCTAGTTAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAAGAAGCTGCATGGGCACTCTCTAATGGTACATCTGGCGGTACACATGAGCAAATCAAGTACTTGGTGAGCCAGGGTTGCATAAAGCCTCTGTGTGATTTGCTTGTTTGCCCTGATCCAAGAATTGTTACTGTCTGTCTGGAAGGTCTTGAAAATATTCTGAAGATTGGAGAAGCAGAGAAGAGCTTTGGTAACACGGGAGATGTCAATTCATATGCTCAAGCTATTGATGACGCCGAGGGATTGGAAAAGATTGAAAACTTGCAGAGTCATGACAACAATGAAATTTATGAGAAAGCTGTTAAAATTCTTGAGACATATTGGTTGGAAGATGAAGACGAGACACTACCTCCAGGCGATGGTTCTCAAGCTGGTTTTAATTTTGGAGCCAATGACCTTCCGGTCCCATCTGGTGGATTCAACTTCAGTTGA 1590 0.4516 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQFPTPLQSSSIVEKKLESLPAMIAGVLSDDNTQQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSNGALIPLLSQLNEQAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALERLVFSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQAIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWALSNGTSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEAEKSFGNTGDVNSYAQAIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPPGDGSQAGFNFGANDLPVPSGGFNFS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09460 529 Pfam Importin beta binding domain 12 94 IPR002652 GO:0006606|GO:0061608
Vifa1g09460 529 Pfam Atypical Arm repeat 456 502 IPR032413 -
Vifa1g09460 529 SUPERFAMILY ARM repeat 6 500 IPR016024 -
Vifa1g09460 529 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Vifa1g09460 529 Pfam Armadillo/beta-catenin-like repeat 105 145 IPR000225 GO:0005515
Vifa1g09460 529 Pfam Armadillo/beta-catenin-like repeat 274 312 IPR000225 GO:0005515
Vifa1g09460 529 Pfam Armadillo/beta-catenin-like repeat 402 439 IPR000225 GO:0005515
Vifa1g09460 529 Pfam Armadillo/beta-catenin-like repeat 316 356 IPR000225 GO:0005515
Vifa1g09460 529 Pfam Armadillo/beta-catenin-like repeat 358 395 IPR000225 GO:0005515
Vifa1g09460 529 Pfam Armadillo/beta-catenin-like repeat 243 270 IPR000225 GO:0005515
Vifa1g09460 529 Pfam Armadillo/beta-catenin-like repeat 147 186 IPR000225 GO:0005515
Vifa1g09460 529 Pfam Armadillo/beta-catenin-like repeat 189 230 IPR000225 GO:0005515
Vifa1g09460 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 369 395 IPR000225 GO:0005515
Vifa1g09460 529 PANTHER IMPORTIN ALPHA 12 498 - -
Vifa1g09460 529 Coils Coil 36 56 - -
Vifa1g09460 529 Gene3D - 11 50 IPR036975 GO:0006606
Vifa1g09460 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 326 369 IPR000225 GO:0005515
Vifa1g09460 529 FunFam Importin subunit alpha 72 495 - -
Vifa1g09460 529 Gene3D - 72 495 IPR011989 -
Vifa1g09460 529 PIRSF Importin_alpha 2 528 IPR024931 GO:0005737|GO:0006606|GO:0061608
Vifa1g09460 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 242 284 IPR000225 GO:0005515
Vifa1g09460 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 115 158 IPR000225 GO:0005515
Vifa1g09460 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 158 200 IPR000225 GO:0005515
Vifa1g09460 529 SMART arm_5 147 187 IPR000225 GO:0005515
Vifa1g09460 529 SMART arm_5 358 398 IPR000225 GO:0005515
Vifa1g09460 529 SMART arm_5 188 230 IPR000225 GO:0005515
Vifa1g09460 529 SMART arm_5 401 441 IPR000225 GO:0005515
Vifa1g09460 529 SMART arm_5 315 356 IPR000225 GO:0005515
Vifa1g09460 529 SMART arm_5 232 271 IPR000225 GO:0005515
Vifa1g09460 529 SMART arm_5 104 145 IPR000225 GO:0005515
Vifa1g09460 529 SMART arm_5 273 313 IPR000225 GO:0005515
Vifa1g09460 529 FunFam Importin subunit alpha 11 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09460 Vifa-Chr1 1500560683 1500563952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09460 130 393 U-box Gene Family AT3G46510 25.660 5.62e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09460 K15042 - gmx:100808498 996.882