Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09429 ATGGCTAGAGGATTGAAGAAACACTTGAAGAGACTGAATGCTCCAAAACATTGGATGCTTGACAAACTTGGTGGAGCTTTTGCACCAAAGCCATCATCTGGACCCCACAAGTCAAGGGAGTGCTTGCCTTTGATTCTCATCCTGAGAAACAGACTAAAATATGCTCTAACGTACAGAGAAGTTATTGCCATTTTGATGCAGCGCCATGTTCTTGTTGATAGCAAGGTTAGGACAAACAAGACATATCCTGCTGGTTTCATGGATGTTGTTTCTATTCCCAAAACAAATGAAAATTTCCGTCTTTTGTATGACACCAAGGGCCGTTTCCGTCTCCACTCTGTGAGAGACGATGAAGCAAAGTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTCGGACAGAAGGGTATTCCCTATCTTAACACCTATGACGGTCGTACCATCCGCTATCCGGATCCACTAATTAAGGCCAATGACACCATCAAACTTGACCTTGAAAACAATAAGATCACTGATTTTATCAAGTTTGATATGGGGAATGTTGTCATGGTTACCGGAGGAAGAAATAGAGGCCGAGTTGGTGTCATCAAGAACAGAGAAATGCCACCAAAAGGAGAGAAGAAGCCCGCGGAGAAGAAACCCGCAGAGGAGAAGAAGTCCACAGTAGCCGAGAAATCTCCGACAGAGAAGAAACCAAAGGCCGGTAAGAAGCTCTCCAAGGACGGTGGTGCCGCGGCCGGGGACAAGAAGAAGAAGAGAAACAAGAAGAGTGTGGAGACATACAAGATCTACATCTACAAAGTTCTGAAGCAGGTTCCCCCAGACATTGGTATCTCAAGCAAGGCCATGGGAATCATGAACAGTTTCATCAACGACATCTTCGAGAAGCTTGCTGCTGAATCTTCCAGACTTGCGAGGTACAACAAGAAGCCGACGATAACTTCCAGGGAAATTCAGACTGCGGTGAGGCTTGTTCTTCCTGGAGAGTTGGCTAAGCATGCTGTGTCTGAGGGTACTAAAGCTGTGACCAAGTTCACAAGCCGTTAG 1044 0.4569 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDSKVRTNKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLENNKITDFIKFDMGNVVMVTGGRNRGRVGVIKNREMPPKGEKKPAEKKPAEEKKSTVAEKSPTEKKPKAGKKLSKDGGAAAGDKKKKRNKKSVETYKIYIYKVLKQVPPDIGISSKAMGIMNSFINDIFEKLAAESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSR 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09429 347 Gene3D - 175 221 IPR014722 -
Vifa1g09429 347 Pfam Core histone H2A/H2B/H3/H4 205 323 IPR007125 GO:0003677
Vifa1g09429 347 CDD S4 51 112 - -
Vifa1g09429 347 SMART h2b3 250 346 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa1g09429 347 Pfam Ribosomal family S4e 95 169 IPR013845 -
Vifa1g09429 347 Hamap 30S ribosomal protein S4e [rps4e]. 7 277 IPR000876 GO:0003735|GO:0005840|GO:0006412
Vifa1g09429 347 Gene3D Histone, subunit A 222 347 IPR009072 GO:0046982
Vifa1g09429 347 MobiDBLite consensus disorder prediction 192 252 - -
Vifa1g09429 347 FunFam Histone H2B 214 347 - -
Vifa1g09429 347 Gene3D - 122 172 IPR038237 -
Vifa1g09429 347 Pfam RS4NT (NUC023) domain 3 39 IPR013843 -
Vifa1g09429 347 ProSitePatterns Histone H2B signature. 315 337 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa1g09429 347 SMART s4_6 42 106 IPR002942 GO:0003723
Vifa1g09429 347 SUPERFAMILY Histone-fold 231 346 IPR009072 GO:0046982
Vifa1g09429 347 ProSitePatterns Ribosomal protein S4e signature. 8 22 IPR018199 -
Vifa1g09429 347 FunFam 40S ribosomal protein S4 1 117 - -
Vifa1g09429 347 FunFam 40S ribosomal protein S4 122 172 - -
Vifa1g09429 347 PRINTS Histone H2B signature 279 299 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa1g09429 347 PRINTS Histone H2B signature 301 318 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa1g09429 347 PRINTS Histone H2B signature 318 331 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa1g09429 347 PRINTS Histone H2B signature 260 278 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa1g09429 347 PRINTS Histone H2B signature 331 344 IPR000558 GO:0000786|GO:0003677|GO:0030527
Vifa1g09429 347 CDD KOW_RPS4 175 199 IPR041982 -
Vifa1g09429 347 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 199 IPR000876 GO:0003735|GO:0005840|GO:0006412
Vifa1g09429 347 Gene3D - 1 117 IPR036986 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09429 Vifa-Chr1 1494414481 1494415524 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09429 1 199 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 91.960 1.68e-139 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09429 K02987 - rcu:8276853 377.096