Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09427 ATGAGTACCGAAAAGCTCAGTGTATCACTTGGGAGATCAACTTTTGACATCATCAAAGACAAAGTGTGGAGACGATTAATGATGGAATTTGATTATCTTGATAATACATATGGTATTTCAGGTAATGATCTTTGTGACGATGCTTTATATTTTGAGTCTGAAGAGTGCACTTGGACGAAGAAAGTAACATCCGGAAAAGTGATCCAAAAAAATATGTTGCGAATTCCCAACAATATGATCAGGATGTGTTTGGCCATGCCTCAAAGCTCGATGGAGCTACTTGATACTGACACTGGAGTATCATACCAGTGCGAGCTAAAACAAAGGAAGGATATAAAGGGGAAGTTTCTTGCTAATTGTTGGTATGACTTTTCCAGACAAAGAAGGTTAAAGAGAGGTGTTGTACTGTCATTTTACCTCCGCTATCCTCCGGCCACGAGACTCTTAGTATGTGTGCTGAATCGGTCATATGTTGGTTGA 480 0.3958 MSTEKLSVSLGRSTFDIIKDKVWRRLMMEFDYLDNTYGISGNDLCDDALYFESEECTWTKKVTSGKVIQKNMLRIPNNMIRMCLAMPQSSMELLDTDTGVSYQCELKQRKDIKGKFLANCWYDFSRQRRLKRGVVLSFYLRYPPATRLLVCVLNRSYVG 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09427 159 Gene3D - 42 158 IPR015300 -
Vifa1g09427 159 SUPERFAMILY DNA-binding pseudobarrel domain 52 155 IPR015300 -
Vifa1g09427 159 Pfam B3 DNA binding domain 59 155 IPR003340 GO:0003677
Vifa1g09427 159 ProSiteProfiles B3 DNA-binding domain profile. 58 156 IPR003340 GO:0003677
Vifa1g09427 159 SMART B3_2 59 156 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09427 Vifa-Chr1 1494262216 1494263230 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa1g09427 B3 2.8e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09427 - K04715 csav:115712608 35.039