Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09405 ATGGAGCTTCAGAAGCATCCAGATCATAACCTACCGGAGAAGAAAGGCCAGAAAAGGAAACTGGAGGAGGATTCTCAACACGACTCACAGATCTCTCTTCCTCCCACCGGAGACGCACAAGACGCACTTATATCCGACGTCAACCAACACGTTTCAAATCTCCTTTCCACTTTTTCATGGAACGAATCCGACAGAGCTTCTGCTAAGCGCGCCACACACGCCCTCGCGGATCTTGCCAAAAACGAGGAAGTTGTGAACGTGATTGTTGAAGGTGGCGCCGTTCCGGCTTTGATTAAGCATCTTCAACCGCCTCCTTTGCCTGAACACGCCGTTCCCAAGCCAGAACATCAACAACTCATTGTTGACAACGGTGCTTTGAAGCATCTCGTTGATCTTTTGAAGAGGCATAACAGTGTCTTAACCTCACGTGTCATTAATAGTCTCATTCGGAGGGCTGCAAATGCCATCACTAACCTTGCTCATGAGAACAACAGTATTAAAACCCGTGTTAGGACGAAAGGTGGGATTCCACCATTAGTTCATTTGCTTGAATTTGCGGATACAAAAGTGCAAAGAGCAGCTGCTGGTGCATTACGGACCCTCGCATTTAAAAATGATGAAAATAAGAATCAGATTGTTGAATGCAATTCTCTTCCAACTCTGATTCTGATGCTTCGGTCAGAAGACGCTGCTATTCACTATGAAGCGGTTGGTGTGATCGGAAATCTGGTCCACTCATCCTCTTGCTGTTAG 753 0.4648 MELQKHPDHNLPEKKGQKRKLEEDSQHDSQISLPPTGDAQDALISDVNQHVSNLLSTFSWNESDRASAKRATHALADLAKNEEVVNVIVEGGAVPALIKHLQPPPLPEHAVPKPEHQQLIVDNGALKHLVDLLKRHNSVLTSRVINSLIRRAANAITNLAHENNSIKTRVRTKGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNSLPTLILMLRSEDAAIHYEAVGVIGNLVHSSSCC 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09405 250 Pfam Armadillo/beta-catenin-like repeat 205 244 IPR000225 GO:0005515
Vifa1g09405 250 Pfam Armadillo/beta-catenin-like repeat 173 202 IPR000225 GO:0005515
Vifa1g09405 250 Gene3D - 32 137 IPR011989 -
Vifa1g09405 250 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 124 174 IPR000225 GO:0005515
Vifa1g09405 250 SUPERFAMILY ARM repeat 49 246 IPR016024 -
Vifa1g09405 250 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 248 IPR044282 -
Vifa1g09405 250 Gene3D - 139 250 IPR011989 -
Vifa1g09405 250 SMART arm_5 113 161 IPR000225 GO:0005515
Vifa1g09405 250 SMART arm_5 205 245 IPR000225 GO:0005515
Vifa1g09405 250 SMART arm_5 163 203 IPR000225 GO:0005515
Vifa1g09405 250 MobiDBLite consensus disorder prediction 1 27 - -
Vifa1g09405 250 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 174 209 IPR000225 GO:0005515
Vifa1g09405 250 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09405 Vifa-Chr1 1487763190 1487764073 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09405 51 243 U-box Gene Family AT3G46510 26.829 6.76e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09405 - - gmx:100819832 390.578