Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09401 ATGGAACAAGAAAAATCTGATTACAAAACAAAATTAGTATTAGATATATGTTCCATTTCAAACCATTCAATTCGTTGTCTTCATACACTTTTCTCTAATGCATCTTTCATTGATTGGTATTGCATTCTTGGTGTGGAAGAAAATGCTGGAGTAAATACCATACGTAAGAAATATCATAAACTTGCTTTGCAACTTCATCCAGATAAGAATAAACATCCCAAAGCTGAAACTGCATTCAAACTTGTCTCTCAGGCATATACATGTCTATCTGATGCTGCAAAAAGAAAATCTTTCAACTTAGAAAGAAACAGAAGCTTCTGCATTGAGTGCAACAGAATCCCATATAAACCCAACATTCTCCCTAACAATTCCAATCCTTCGAGTTTCAAGGCATGGAACATTACCAGCAAATCAGTATCTAGTAAAGTTAGAAGAAATATTTTGGACATGAGAGAAAGATTGAAGGAAGAGGCCAAGGTGATAGAGAGTTGTCTGAGGACAAGACGGAAAATGCAGTGCACCGCGACAAGAGAGATGCGAAAGCTAAGTATAGCTCACCAATTTTCGAGGTCAAGTAGTGTGGACACAAGAAAATTTGCTTGTGTTTCATCAGTTTTAGTTTAA 624 0.3606 MEQEKSDYKTKLVLDICSISNHSIRCLHTLFSNASFIDWYCILGVEENAGVNTIRKKYHKLALQLHPDKNKHPKAETAFKLVSQAYTCLSDAAKRKSFNLERNRSFCIECNRIPYKPNILPNNSNPSSFKAWNITSKSVSSKVRRNILDMRERLKEEAKVIESCLRTRRKMQCTATREMRKLSIAHQFSRSSSVDTRKFACVSSVLV 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09401 207 ProSiteProfiles dnaJ domain profile. 38 102 IPR001623 -
Vifa1g09401 207 PRINTS DnaJ domain signature 74 94 IPR001623 -
Vifa1g09401 207 PRINTS DnaJ domain signature 40 58 IPR001623 -
Vifa1g09401 207 PRINTS DnaJ domain signature 58 73 IPR001623 -
Vifa1g09401 207 CDD DnaJ 38 91 IPR001623 -
Vifa1g09401 207 SUPERFAMILY Chaperone J-domain 31 101 IPR036869 -
Vifa1g09401 207 Gene3D DnaJ domain 37 159 IPR036869 -
Vifa1g09401 207 SMART dnaj_3 37 94 IPR001623 -
Vifa1g09401 207 PANTHER BNAC03G44070D PROTEIN 34 174 - -
Vifa1g09401 207 Pfam DnaJ domain 38 99 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09401 Vifa-Chr1 1487136408 1487137603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09401 38 106 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 41.096 1.54e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09401 - - gmx:100781104 240.35