Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09399 ATGGCGACGGAGAAGTTAATGACCGCCGGTGGCCCGCGCTACGTTCAGATGAAATCGTCTCCGCCATCGTCTCCTCCGGCGGCCGAGAATTCGTCAAGTCTGTCGTTTCGACACAGTGCCGCCGGCGATATGTATCGGATTTTCGATGAATTGCCGAAAGCAACTATCGTCTCCGTCTCTCGTCCTGATCCTAGTGATATCAGTCCTATGCAACTCTCATATACTATTGAGGTTGAGTATAAACAGTTCAAGTGGGAGCTAGTGAAGAAAGCTCATCAAGTATTTATTTTGCATTTTGCATTAAAGAAGCGTGTCTTTATTGAGGAAATTCATGAGAAGCAAGAGCAGGTTAAAGAATGGCTTCACAATCTAGGAATTGGAGAACACAGTACTATGGAACAAGATGACGATGAAGGTGACAATGAAACAGTTCCTTTACAAACTGATGAAAGTGCTAAAAACAGAGACGTTCCATCTAGTGCTGCTCTTCCAATTATACGGCCAGCTTTAGGAAGACAGCATTCTATTGCAGACAGGGCAAGAAGTGCAATGCAAGGGTATCTGAATCACTTTTTGGGAAATATTAGTATTGTTAACTCTCCTGAGGTTTGCAAGTTTTTGGAGGTGTCAATGCTATCTTTTTCACCGGAATATGGCCCTAAGCTGAAGGAGGAATATGTAATGGTGAAGCATCTGCCTAAAATAAAAAAAGATGAAGACTCCCGAAAGTGTTGTTTGTCTGACTGTTTTAATTGTTGTAATGACAATTGGCAAAAGGTGTGGGCCGTACTGAAACCTGGATTCTTGGCATTGCTGGCACATCCTATTGATAAACAGCCCTTGGACATTATTGTTTTTGATGTACTGCCTGGCTCAGATGCCAACGGGGATGGCCGTTTATCATTAGCGATTGAAATGAAGGAACGGAATCCTTTACGGCATTCGTTCAAGGTGACTTGTGGAATTCGAAGTATTAGAGTTAGAAGTAAAAGTAGTAGTAAAGTTAAAGACTGGGTCGCTGCAATTAATGATGCTGGACTCAGACCTCCTGAAGGCTGGTGTCATCCTCATCGCTATGGTTCTTTTGCTCCTCCAAGAAGCTTAAATGAAGATGACAGTCAAGCCCAGTGGTTTGTAGACGGGCAATCAGCATTTGAGGTCATTGCTTCTTCAATCGAAGATGCCAAATCCGAGATATTTATCTGTGGGTGGTGGCTGTGCCCAGAACTGTATCTACGACGACCTTTCCAAACTCATGCTTCATCAAGGCTTGATAATCTGTTGGAAGCAAAAGCTAAGGAAGGGGTTCAGATTTACATTCTTCTCTACAAAGAGGTGGCTCTTGCTTTGAAAATCAACAGCGTCTATAGCAAGAGAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGACCACTTTTCTACTGGTGTTTACCTGTGGTCACACCATGAAAAACTTGTCATTGTTGATAATCATATTTGCTTCATCGGAGGACTGGATTTATGCTTTGGTCGATACGACTCGCCTGAACATAAGGTGGGAGATGTTCCTCCGCAAATTTGGCCTGGAAAGGACTATTACAACCCAAGAGAATCTGAGCCAAATTCATGGGAAGACACCATGAAAGATGAATTGGAACGTGAAAAGTATCCTCGTATGCCTTGGCATGATGTTCATTGTGCCCTTTGGGGACCACCTTGTCGTGACATTGCTAGGCACTTTGTTCAGCGATGGAATTACGCTAAGAGGAACAAAGCTCCATATGAGCAAACGATACCTCTACTCATGCCTCAACATCATATGGTTATTCCCCATTACTTGGGAAGCAGTGAGACACCAGTCGAAATTAAGAACACTGTCAATGATAGAGCCCTCAAGAGAGAAGATTCATTTTCCTCATCTTCCCAAGACCAAGATATTCCTCTACTCCTGCCTCAAGAGCCAGGTGGGTTGGATGATCCTGAAGGAGACCCTAAACCAAATGGACTAATCTCATTTCTACATCACCTTGACAAGCCTAGAAGGATCAGCAGTGGCCTTCCTTTCTCATTCAGAAGAGCCAAAGTTGCAGCAGTTGGTCCGGATACACCAATGAAGGGCTTTGTAGATGATCTTGACTCTGTTCATTGTCACGAGAAAACTGCTCATGATAGAGTGGCTCACGTTGATTCACAAAATACAGATCTTGAATGGTGGGAAACACAAGAGCGGGGTGACCAAGGAGGTTTAGCAGATGAATCCGGACAAATTGGTCCTCGTGCTTCCTGCCGTTGCCAGGTTATTAGGAGCGTAAGTCAGTGGTCGGCTGGAACAAGCCAAACTGAAGAGAGCATCCACAATGCTTATTGCTCTCTCATTGAGAAATCTGAACATTTCATCTACATTGAGAATCAGTTTTTTATCTCAGGTCTTTCTGGAGATGATATGATACGCAATCGTGTGTCAGAAGCTTTATATCGGCGGATTATGCGAGCTTATAATGACAAAAAATCTTTCAGGGTTATAGTCGTCATACCACTCCTTCCTGGATTCCAGGGGGGGCTTGATGATGGTGGTGCAGCATCAGTGAGAGCTATAATGCATTGGCAGTACCGAACCATTTGCAGAGGGCAGAATTCTATCATACATAATCTTTATCAGCTTCTTGGTTCCAAAGTACATGACTACATCTCTTTTTACGGCCTGAGGAATTATGGTAAACTATCTGATAGTGGTGGTTACGTGGCAACCAGCCAGGTGTACGTCCACAGTAAAATCATGATTATTGATGACTGTATAAGTTTGATTGGATCTGCTAATATTAATGATAGGAGCTTACTCGGCTCCCGGGACTCTGAGATTGGTGTAGTTATAGAAGACAAAGAGTTGATTGATTCATATATGGATGGAAAGCCTTGGAAGGCAGGGAAGTTTTCTTTGAGTCTCCGATTATCTTTATGGTCTGAACACTTAGGTCTCCCGGCAGGAGAGGTCAGTCAAATAATGGACCCCGTTGTTGAGTCTACATACAAGGATATTTGGATGGCAATAGCAAAGACAAATACTGCAATTTATCAGGATGTCTTTTCCTGTGTACCTAATGATCTGATACACACCAGACTTGCTTTCAGACAAAGCATGGCTTTATGGAAAGAAAAAATTGGACACACTACCATTGATTTAGGAATAGCCCCAGAGAAACTAGAATCCTATCATGATGGAAAAATCAAGAATACTCATCCCATGGAGAGATTAGCATTAGTAAAGGGTCATCTTGTTTCTTTTCCCTTGGAGTTCATGTCTCAAGAAAGTCTAAGACCTGCTTTTAATGAAGGCGAATACTATGCAGCTCAAGTTTTCCATTGA 3357 0.4287 MATEKLMTAGGPRYVQMKSSPPSSPPAAENSSSLSFRHSAAGDMYRIFDELPKATIVSVSRPDPSDISPMQLSYTIEVEYKQFKWELVKKAHQVFILHFALKKRVFIEEIHEKQEQVKEWLHNLGIGEHSTMEQDDDEGDNETVPLQTDESAKNRDVPSSAALPIIRPALGRQHSIADRARSAMQGYLNHFLGNISIVNSPEVCKFLEVSMLSFSPEYGPKLKEEYVMVKHLPKIKKDEDSRKCCLSDCFNCCNDNWQKVWAVLKPGFLALLAHPIDKQPLDIIVFDVLPGSDANGDGRLSLAIEMKERNPLRHSFKVTCGIRSIRVRSKSSSKVKDWVAAINDAGLRPPEGWCHPHRYGSFAPPRSLNEDDSQAQWFVDGQSAFEVIASSIEDAKSEIFICGWWLCPELYLRRPFQTHASSRLDNLLEAKAKEGVQIYILLYKEVALALKINSVYSKRKLLSIHENVRVLRYPDHFSTGVYLWSHHEKLVIVDNHICFIGGLDLCFGRYDSPEHKVGDVPPQIWPGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKAPYEQTIPLLMPQHHMVIPHYLGSSETPVEIKNTVNDRALKREDSFSSSSQDQDIPLLLPQEPGGLDDPEGDPKPNGLISFLHHLDKPRRISSGLPFSFRRAKVAAVGPDTPMKGFVDDLDSVHCHEKTAHDRVAHVDSQNTDLEWWETQERGDQGGLADESGQIGPRASCRCQVIRSVSQWSAGTSQTEESIHNAYCSLIEKSEHFIYIENQFFISGLSGDDMIRNRVSEALYRRIMRAYNDKKSFRVIVVIPLLPGFQGGLDDGGAASVRAIMHWQYRTICRGQNSIIHNLYQLLGSKVHDYISFYGLRNYGKLSDSGGYVATSQVYVHSKIMIIDDCISLIGSANINDRSLLGSRDSEIGVVIEDKELIDSYMDGKPWKAGKFSLSLRLSLWSEHLGLPAGEVSQIMDPVVESTYKDIWMAIAKTNTAIYQDVFSCVPNDLIHTRLAFRQSMALWKEKIGHTTIDLGIAPEKLESYHDGKIKNTHPMERLALVKGHLVSFPLEFMSQESLRPAFNEGEYYAAQVFH 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09399 1118 PIRSF PLD_euk 26 620 IPR016555 GO:0004630|GO:0006654|GO:0048017
Vifa1g09399 1118 PIRSF PLD_euk 609 1118 IPR016555 GO:0004630|GO:0006654|GO:0048017
Vifa1g09399 1118 Pfam Phospholipase D Active site motif 482 509 IPR001736 GO:0003824
Vifa1g09399 1118 Gene3D - 236 346 IPR011993 -
Vifa1g09399 1118 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 482 509 IPR001736 GO:0003824
Vifa1g09399 1118 MobiDBLite consensus disorder prediction 17 33 - -
Vifa1g09399 1118 SUPERFAMILY PH domain-like 254 345 - -
Vifa1g09399 1118 CDD PLDc_vPLD1_2_yPLD_like_1 375 520 - -
Vifa1g09399 1118 PANTHER PHOSPHOLIPASE D 161 1108 IPR015679 -
Vifa1g09399 1118 SMART pld_4 482 509 IPR001736 GO:0003824
Vifa1g09399 1118 SMART pld_4 915 942 IPR001736 GO:0003824
Vifa1g09399 1118 Gene3D Endonuclease Chain A 366 605 - -
Vifa1g09399 1118 SUPERFAMILY Phospholipase D/nuclease 755 966 - -
Vifa1g09399 1118 SUPERFAMILY Phospholipase D/nuclease 332 602 - -
Vifa1g09399 1118 MobiDBLite consensus disorder prediction 1 33 - -
Vifa1g09399 1118 FunFam Phospholipase 748 969 - -
Vifa1g09399 1118 Gene3D Endonuclease Chain A 716 974 - -
Vifa1g09399 1118 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 915 942 IPR001736 GO:0003824
Vifa1g09399 1118 MobiDBLite consensus disorder prediction 631 663 - -
Vifa1g09399 1118 Pfam PLD-like domain 787 964 IPR025202 -
Vifa1g09399 1118 CDD PLDc_vPLD1_2_yPLD_like_2 774 959 - -
Vifa1g09399 1118 CDD PH_PLD 198 345 - -
Vifa1g09399 1118 MobiDBLite consensus disorder prediction 130 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09399 Vifa-Chr1 1486929234 1486949226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09399 1 999 Phospholipase D Gene Family (Wang group) AT3G16785 71.614 0.0 1383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09399 K01115 - gmx:100780514 1977.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09399 1 1486929234 1486949226 Vifa1g09399 1 1486929234 1486949226 ECH