Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09397 ATGTGTGGTGGTGCTATCATCTCAGATTTCATTGGTGTCAAGCGTGACCGTGACCTATGGTTTGAGCTTGATCCTTCTGTTGATCTACTTGGTCTCGGTGCTGCTACTAACACCCCCACTGCCAAAGATTTACCTCCCCTTCACTTTCCACAATTTTACTCACCCAAAAGAGTGGTAGCATGTGACATTGCGGAGAAGAAACAAAGTTTGGTAACTGTAGAGAAAGGTAAGAAAAGCAGCGGAGGGAAAAGAGCTCGTAAGAATGTTTACAGAGGAATCAGGCAGAGGCCATGGGGGAAATGGGCTGCTGAGATAAGGGACCCACAGCAAGGTGTCCGTGTCTGGCTCGGTACTTTCTCGACGGCCGAAGAGGCCGCCAGAGCGTATGATGCCGCCGCGAAGAGAATTCGCGGAGACAAGGCTAAGCTTAATTTTCCAGATGCTCCTGTTTGTTATGCTGCTAGAGCTGTCACCGCACCTCCAATGAAGAAGCGGTGTGTTAGCTATAATTCTGATCAAGTCAGTACGCAACAGACTAGTTCTGAGTCTGCTGCGTCGTCTGAGTTTGATCAGGAGATGGAAATCAAGAAGAAAATGTCTGATCTTGAATGGATTCTAGGTTTGGAGAATGAACTTCCTCAGTTTCCTCAGTCTCTTGTTCAGACTCAGGCTCAAGCTATGCCTACACCGTTCACTATGCCTGCTGATTTCGACAACAACTTCCTCGACGCATGGACCTTTGAAGAAATGGTTGATCCCATCCATAACCTGATTTTTAACTAG 783 0.4725 MCGGAIISDFIGVKRDRDLWFELDPSVDLLGLGAATNTPTAKDLPPLHFPQFYSPKRVVACDIAEKKQSLVTVEKGKKSSGGKRARKNVYRGIRQRPWGKWAAEIRDPQQGVRVWLGTFSTAEEAARAYDAAAKRIRGDKAKLNFPDAPVCYAARAVTAPPMKKRCVSYNSDQVSTQQTSSESAASSEFDQEMEIKKKMSDLEWILGLENELPQFPQSLVQTQAQAMPTPFTMPADFDNNFLDAWTFEEMVDPIHNLIFN 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09397 260 Gene3D AP2/ERF domain 89 147 IPR036955 GO:0003700|GO:0006355
Vifa1g09397 260 ProSiteProfiles AP2/ERF domain profile. 89 146 IPR001471 GO:0003700|GO:0006355
Vifa1g09397 260 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Vifa1g09397 260 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Vifa1g09397 260 CDD AP2 90 148 IPR001471 GO:0003700|GO:0006355
Vifa1g09397 260 Pfam AP2 domain 89 138 IPR001471 GO:0003700|GO:0006355
Vifa1g09397 260 SMART rav1_2 89 152 IPR001471 GO:0003700|GO:0006355
Vifa1g09397 260 PANTHER DNA-BINDING DOMAIN 78 188 IPR044808 GO:0003700|GO:0009873
Vifa1g09397 260 SUPERFAMILY DNA-binding domain 89 147 IPR016177 GO:0003677
Vifa1g09397 260 FunFam Ethylene-responsive transcription factor 2 88 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09397 Vifa-Chr1 1486524854 1486526396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09397 1 225 AP2-EREBP Transcription Factor Family AT3G16770 40.316 3.50e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa1g09397 AP2 4.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09397 K09286 - gmx:100817253 191.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09397 1 1486524854 1486526396 Vifa1g09397 1 1486524854 1486526396 ECH