Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09396 ATGAGGAGCAAGTTACATCTGAGCAAGATCTATTCCTTCGCATGTGGGAGACCGTCTTTTAAAAGAGAACATTCACATATTGGAGAGCGTGGATATTCAAGGCATGTGTTTTGCAATCAACCACACACTTTTGAATATGCAGATAATTCAGTGAGCTCTACGAAGTATACTGTTGCTACATTTTTGCCCAAGTCACTTTTTGAACAGTTTAGGAGAGTCGCTAATTTCTATTTTTTGGTAACTGGTACTTTGGCCTTTACAAACCTTGCTCCCTATACAGCTGCTAGTGCTATTCTTCCTTTGCTTATTGTTATTGGTGCTACTATGGTTAAAGAAGGTATTGAAGATTGGAGACGCAAAAAACAGGATATTGAGGTCAATAATACAAGAGTTCAAGTGCATAAAGGTCATGGAACTTTTGAATATACTGAGTGGAAGAATCTCAAGGTGGGGCATATAGTAAAGATAGTAAAAGATGAATTCTTCCCTGCAGACCTCCTACTTGTTTCATCCAGTTATGAAGATGCAGTCTGTTATGTCGAGACAATGAATTTGGATGGGGAGACTAATTTGAAGTTAAAACAAGCTCTTGGATCTGTTTTTTTTGGAATTACAACTAAACATGATTTGAACCAACAAGGTGTCATCAAAAGATGGTATCTAAGACCAGATCATTCTACAATTTTCTTTGATCCTAAAGGAGCTTTTGCTGCTGCTACATTTCATTTTTTGACAGCCTTAATGTTATACAGTTTCTTCATTCCAATCTCATTGTATGTATCAATAGAAATTGTCAAAGTTCTTCAAAGCATCTTCATCAATCAAGATATGCATATGTACTACGCCGAAGCAGATAAACATGCCTATGCCCGTACTTCAAACTTGAATGAGGAACTTGGACAAGTTGATACAATACTTTCTGATAAAACTGGAACTCTCACTTGCAACTCAATGGAGTTTATAAAATGTTCCATTGCTGGGGTAGCTTATGGCCGTGGTGTTACAGAGGTCGAGAGGGCCATGAATAGAAGAAATAATTCTCCTTTGATTAATGACATCACACTTTCTCCCATTGCAAATGAACCCTTACCCGTCAAGGGTTTTAACTTCACAGATGAAAGGATAACCAATGGAACCTGGGTTAATGAGCCTAATGCAGATATTATCCACAAGTTTTTTCGCTTGTTGGCAATCTGTCATACAGCCATACCAGAAGTGGATGATGATGCAGGAAATGTATCGTATGAAGCCGAGTCTCCTGATGAAGCAGCATTTGTGGTTGCAGCCAGAGAGATTGGTTTTGAATTCTATAAAAGGACTCAAACTACTTTATCCATGTATGAATTGGATCCTGTTTCTGGTGACAAAGTCGAAAGAGTTTTCACACTTCTGAATGTGTTAGAATTCAATAGCACAAGGAAGCGAATGTCAGTGATAGTGAAAGATGAAGAAGGGAGAATTTTGCTGCTGTGTAAAGGAGCAGACAGTGTCATGTTTGAAAGACTTTCCAAGGATAGTAGGGAATATGAAGAGAAAACCTTGGAAGATGTGCATGAATATGCTGACGCAGGTCTAAGGACCCTGATATTGGCTTACCGTGAACTTGACGAAGAGAAATACAAGGAGTTTGATAACGAATTTTCTCAAGCAAAAATTTCAGTTAGTGCAGATCGGGAAACATTGATAGATGAGGTAACAGATATGATTGAGAGTGATCTAATCCTTCTTGGTGCAACTGCTGTAGAGGACAAGCTCCAAAATGGGGTTCCTGATTGCATTGACAAACTTGCACAAGCTGGAATTAAGATATGGGTTCTAACTGGTGATAAAATGGAGACTGCCATCAATATTGGTTTTGCTTGTAGTTTTCTTAGACAAGGAATGAAGCAGCTTATAATTCAGTTGGATACTCCAGACATTCAAGCATTGGAGAAGGCTGGAGACAAGAGGGCCATTGCAAAAGCTTCACAGGAAAATATCCGGCATCAGATATCTGATGGTGCTCAACAGCTTGCCGCCTCTAGAGGAACCTCTGAGCAAGCATTTGCACTAATTATTGATGGAAAATCACTCGCCTACGCTTTAGAGGATAATATGAAGGACATGTTTCTAGATCTTGCAATTCACTGTGCATCTGTTATCTGCTGCCGGTCATCGCCAAAGCAGAAAGCACTAGTTACTAGACTGGTAAAATCTGGAACTGGTAAAACTACATTAGCTATTGGTGATGGAGCTAATGATGTTGGAATGCTTCAAGAAGCTGATATAGGGGTTGGAATCAGTGGAGTTGAAGGAATGCAGGCTGTTATGTCTAGTGATATTGCAATCGCACAGTTTCGTTATTTGGAAAGATTACTTCTTGTACATGGACATTGGTGTTACAGGAGGATCTCATCAATGATATGCTATTTTTTCTACAAGAACATCACATTTGGCTTTACTCTATTCTTGTATGAAGTATGTACATCATTCTCTGGACAGCCTGCATACAATGACTGGCTTTTGTCTCTCTATAATGTCTTCTTTTCATCACTTCCAGTGGTTGCCCTTGGAGTCTTTGACCAGGATGTATCTGCTCGGTACTGTCTAAGATTTCCTATATTGTATCAAGAAGGTGTGCAAAATGTCCTGTTTAACTGGAGGAGGATCCTAAGTTGGATGATAAATGGATTTATGAGTGCCATAATAATATTCTTCTTCTGCACAAACGCCATGGAGATTCAGGCCTTTGATAATGAAGGAAGAACTGCTGGGAGGGATATACTCGGAGCAACTATGTATACATGTGTGGTTTGGGTTGTGAACTTGCAGATGGCACTTGCCATAAATTACTTCACATTGATTCAACATGTTTTCATATGGGGAACCATCGCTCTATGGTACCTTTTTCTATTGGTTTACGGTGCACTACCTCCTGGAATTTCCACAATTTCTTATAAACTCTTCCTTGAAACTCTTGCACCATCTCCTTCTTATTGGATTGTCACATTGTTTGTGGTGATCACAACACTCATACCATACTTGTCTTATTCAGCAATGAAGATCCAGTTCTTTCCTTTTTATCATGAGATAGTACAATGGATAAGGTATGAGGGGAAGACAAATGATCCCGAATTCTGCCATATGGTGCGCCAGAGATCCTTGCGCCCAACCACAGTTGGTTCAACAGCACGCTTAGCAGCTAAGACTAACAGCATTAGAGAGAGTTCTACTAACCAAAGATGA 3225 0.3947 MRSKLHLSKIYSFACGRPSFKREHSHIGERGYSRHVFCNQPHTFEYADNSVSSTKYTVATFLPKSLFEQFRRVANFYFLVTGTLAFTNLAPYTAASAILPLLIVIGATMVKEGIEDWRRKKQDIEVNNTRVQVHKGHGTFEYTEWKNLKVGHIVKIVKDEFFPADLLLVSSSYEDAVCYVETMNLDGETNLKLKQALGSVFFGITTKHDLNQQGVIKRWYLRPDHSTIFFDPKGAFAAATFHFLTALMLYSFFIPISLYVSIEIVKVLQSIFINQDMHMYYAEADKHAYARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVERAMNRRNNSPLINDITLSPIANEPLPVKGFNFTDERITNGTWVNEPNADIIHKFFRLLAICHTAIPEVDDDAGNVSYEAESPDEAAFVVAAREIGFEFYKRTQTTLSMYELDPVSGDKVERVFTLLNVLEFNSTRKRMSVIVKDEEGRILLLCKGADSVMFERLSKDSREYEEKTLEDVHEYADAGLRTLILAYRELDEEKYKEFDNEFSQAKISVSADRETLIDEVTDMIESDLILLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSFLRQGMKQLIIQLDTPDIQALEKAGDKRAIAKASQENIRHQISDGAQQLAASRGTSEQAFALIIDGKSLAYALEDNMKDMFLDLAIHCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTLFLYEVCTSFSGQPAYNDWLLSLYNVFFSSLPVVALGVFDQDVSARYCLRFPILYQEGVQNVLFNWRRILSWMINGFMSAIIIFFFCTNAMEIQAFDNEGRTAGRDILGATMYTCVVWVVNLQMALAINYFTLIQHVFIWGTIALWYLFLLVYGALPPGISTISYKLFLETLAPSPSYWIVTLFVVITTLIPYLSYSAMKIQFFPFYHEIVQWIRYEGKTNDPEFCHMVRQRSLRPTTVGSTARLAAKTNSIRESSTNQR 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09396 1074 Gene3D - 572 781 IPR023214 -
Vifa1g09396 1074 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 375 578 IPR023299 GO:0000166
Vifa1g09396 1074 PRINTS P-type cation-transporting ATPase superfamily signature 306 320 - -
Vifa1g09396 1074 PRINTS P-type cation-transporting ATPase superfamily signature 741 760 - -
Vifa1g09396 1074 SFLD Haloacid Dehalogenase 288 792 - -
Vifa1g09396 1074 ProSitePatterns E1-E2 ATPases phosphorylation site. 308 314 IPR018303 -
Vifa1g09396 1074 Pfam Cation transport ATPase (P-type) 412 503 - -
Vifa1g09396 1074 Pfam Phospholipid-translocating ATPase N-terminal 37 95 IPR032631 -
Vifa1g09396 1074 SUPERFAMILY Calcium ATPase, transmembrane domain M 45 1018 IPR023298 -
Vifa1g09396 1074 Pfam Phospholipid-translocating P-type ATPase C-terminal 769 1019 IPR032630 -
Vifa1g09396 1074 FunFam Phospholipid-transporting ATPase 576 781 - -
Vifa1g09396 1074 Gene3D - 107 219 - -
Vifa1g09396 1074 Gene3D - 418 550 IPR023299 GO:0000166
Vifa1g09396 1074 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 33 197 - -
Vifa1g09396 1074 FunFam Phospholipid-transporting ATPase 418 576 - -
Vifa1g09396 1074 SFLD p-type atpase 288 792 IPR044492 -
Vifa1g09396 1074 NCBIfam HAD-IC family P-type ATPase 712 823 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g09396 1074 SUPERFAMILY HAD-like 294 785 IPR036412 -
Vifa1g09396 1074 NCBIfam phospholipid-translocating P-type ATPase 199 1026 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vifa1g09396 1074 SUPERFAMILY Calcium ATPase, transduction domain A 135 208 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09396 Vifa-Chr1 1485632643 1485637394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09396 5 197 Primary Pumps ATPases AT1G68710 69.697 1.43e-84 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09396 K01530 - gmx:100811892 1489.17