Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09387 ATGGCAAGTCCCGACCAAATGCAGAGGTTTTCACTTCTTGGTGTCTCATGCATACTTCTTGTCGCCGTGGTCGCCGCTGCAGGCGGAGAAGGACAACAGAATGCTGGCAAGCTTTGTGAATCAATGCAGTACCAAGAAGCATGCCACAAGAGTCTTGAGAAGGCGTCCGGCCAAACGACCGATGTTAAAGAGCTTTTGAAAGCCGCATTTAATGCAACATCAGCGGAGTTGGTGAAACATATTAACAATTCATCTCTCTATCATGAGTTGGTGAAGGACAACAGGACAAAACAAGCAGTGGAAGTTTGCAATGAGGTTTTGAATTATGCTGTCGACGGAATCTCTAAATCGGTTGGTAAAATCGACAACTTTGATATCAATAAGTTGAATGAATATGGTTATGATCTCAAAGTTTGGTTAACCGGTACACTTTCGCATCAACATACATGTCTGGATGGCTTCGAGAATTCAACAACGACAGCAGGGTCTTGGCGAAAACACCAATACTGCGAAGGACAAAGACGCCTTCTCGCCGATGAAACCGTTAAGCCAAATGCTGTTGTCGCGCAAGACGGTAGTGGACAGTTTAAGACAGTTGCTGATGCTCTTAAGACTGTTCCTGCCAATAATGCACAACCTTTTGTCATTCATGTTAAGGAAGGTGTTTATAAGGAGAATGTTAATGTTGCTTTGGAACAGAATTTTGTTACCATCATCGGCGATGGTCCTACCAAGACCAAATTCACTGGTAGCCTCAACTTTGTCGATGGTTTAGTTGCTTACAACACCGCAACCTTCGGTGTAAATGGTGCAAACTTCATGGCAAAGGATGTTGGATTCGAGAACACAGCCGGACCAGAAAAACGTCAGGCAGTAGCACTCCGAGTAACAGCAGACAAAGCAGTCTTCTACAACTGTCAAATGGACGGTTTCCAAGCCACACTCTTCGCGGAATCCCAACGCCAATTCTACCGTGACTGCACCATCTCAGGCACAATCGACTCCATCTTCGGCGACGCCATTGGAGTTTTCCAAAACTGCAAACTAGTCGTTAGGAAACCAGCTGAAGAGCAAGAATGTACCGTAACAGCAAGTGGTAGAGTCAAATCCGACAGCCCAAGCGGTCTCATTTTCCAAACCTGTCACTTCACAGGTGAACCAGAATTAGCATCAATGACACCCAAAATCTCTTACCTCGGAAGACCATGGAAGGCATACGCGAGAGTCGTCATAATGGACTCAACCATCGATGACATTTTCGTCCCTGATGGTTACATGCCATGGATGGGAACTGTTTTCATCGACACATGTACTTTTTACGAGTATAACAATAAAGGTCCAGGTGCTGACACAAAAGGAAGAGTTAAGTGGCCCGGTGTCAAAACTATATCCGCGACCGAAGCAGCTGATTTCTACGCTGGAAAATTCTTTGAGATTGCTAATTCAACCGATCGCGATTCTTGGATTGTGAAGTCTGGTGTTCCGTATTCACTTGATCCTTCACATTCTAGCAGTGGCGGCGGTAAGTCCGAGCCCGGAAGTAATAATTCGGAGGCTGGCAGTCATTCCGGAGCTACAAGAAGGGAGACATTTTACAACGGCTTTTTCATAGCTGCTGTGTATTTGTTGGCAAATATTTGGATGTAA 1647 0.4529 MASPDQMQRFSLLGVSCILLVAVVAAAGGEGQQNAGKLCESMQYQEACHKSLEKASGQTTDVKELLKAAFNATSAELVKHINNSSLYHELVKDNRTKQAVEVCNEVLNYAVDGISKSVGKIDNFDINKLNEYGYDLKVWLTGTLSHQHTCLDGFENSTTTAGSWRKHQYCEGQRRLLADETVKPNAVVAQDGSGQFKTVADALKTVPANNAQPFVIHVKEGVYKENVNVALEQNFVTIIGDGPTKTKFTGSLNFVDGLVAYNTATFGVNGANFMAKDVGFENTAGPEKRQAVALRVTADKAVFYNCQMDGFQATLFAESQRQFYRDCTISGTIDSIFGDAIGVFQNCKLVVRKPAEEQECTVTASGRVKSDSPSGLIFQTCHFTGEPELASMTPKISYLGRPWKAYARVVIMDSTIDDIFVPDGYMPWMGTVFIDTCTFYEYNNKGPGADTKGRVKWPGVKTISATEAADFYAGKFFEIANSTDRDSWIVKSGVPYSLDPSHSSSGGGKSEPGSNNSEAGSHSGATRRETFYNGFFIAAVYLLANIWM 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09387 548 CDD PMEI-like_3 38 155 - -
Vifa1g09387 548 ProSitePatterns Pectinesterase signature 1. 210 229 IPR018040 -
Vifa1g09387 548 Gene3D - 182 500 IPR012334 -
Vifa1g09387 548 PANTHER PECTINESTERASE 17 489 - -
Vifa1g09387 548 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 170 IPR035513 -
Vifa1g09387 548 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 157 IPR035513 -
Vifa1g09387 548 MobiDBLite consensus disorder prediction 499 524 - -
Vifa1g09387 548 FunFam Pectinesterase 4 182 500 - -
Vifa1g09387 548 NCBIfam pectinesterase inhibitor domain 15 158 IPR006501 GO:0004857
Vifa1g09387 548 SMART PMEI_2 30 189 IPR006501 GO:0004857
Vifa1g09387 548 Pfam Pectinesterase 185 477 IPR000070 GO:0030599|GO:0042545
Vifa1g09387 548 Pfam Plant invertase/pectin methylesterase inhibitor 37 161 IPR006501 GO:0004857
Vifa1g09387 548 SUPERFAMILY Pectin lyase-like 181 497 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09387 Vifa-Chr1 1483685345 1483687335 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09387 12 496 Carbohydrate Esterase AT5G49180 41.324 6.55e-140 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09387 K01051 - gmx:100800194 615.535