Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09385 ATGGAAGGAATGCGTGATAATATCAACGGTAGTCGTAACGAGAAGAAAAGATTTGCACTTGTTGGTGTCTTTTACATTCTTCTTATCGTTGTGGTCCACACCGATGCGACGCGCGGAGGCCTTGATGAACCAGGAGAACTTGAAATTCTTTGTCAATCAAACCCGGATATATGTAACCCCACGACACTCGGAACACTCGGAAGAGTGTTTAGCGGAACAAGTAACACAAAAGATGGTATAAAAAAAGCGTTCATTGCAGCAGCCGAGGAGTTATCGAAACACACAAACAATCCATCTCTTTTTACTGAATTGGTAAAAGACAACATGACGAGACAAGCGATGCGAATTTGCAACGAAGTAATGGATAATGCTATTGATGGAGTTAATAAATCTGTTGGGGAATTAGACAGATGTGATTCCAATAGCTTGAGTGAGATTGTTTTTGATCTTAAAGTTTTGATAACTGCTACACTTACAGATCAACAAACATGTTTGGATAGTTTCGAGAAAGTAGACACAAAAGCTAGTCAGAGAATGGCTCAGGTTTTGAGCGCTTCTATGAAATTAAGCAACGCTGCTATCGACATGCTTAACTCACTTTCTGGATTGAATAAGGATTTTGGCCAAGTCCCAAGTGGTGGTTTTAATAGGAAGACTTTACCCGATGAGTCAACAGCGCGTGTTGATGGTGTTCCAACATGGGTTAGCGAACGACAGCAGCGACTTCTTGCTGAAACAACAGTTAAGCCAAATGTTGTTGTGGCGCAAGACGGTAGTGGAGAGTTTAAAACCGTTGCTGAAGCTCTTAAGACTGTTCCGGCGAATAATGCAAAACCTTTTGTTATTCATGTTAAAGCTGGTGTTTATAAAGAGGTTGTTAATATTCCTATGGAGATGAATTATGTTACCATCATCGGTGATGGTCCTACAAAAACTAAATTCACGGGTAGCCTCAACTTCGTTGATGGCGTCCTAATTTACCACAGTGCAACCGTCGCTGTGAATGGTGCAAACTTTGTGGCAAAGGATATAGGCATTGAAAACACAGCAGGACCGAGTAAAAAGCAAGCAGTAGCACTAAGAGTTTCAGGAGACATGGCAGTATTCTACAACTGTCAAATAGATGGTTACCAAGACACACTCTTTGCCCAATCCCTACGCCAATACTTTCGCGATTGTATCATCTCGGGTACAGTCGACTTTATATTCGGCGACCCCTTTGGAGTTTTCCAAAACTGCAAAATTATAGTTAGAAAACCATTAACAGACCAAGCCAATTTAGTAATAGCTGGTGGAAGACTCACATCGAGCAGCTCAGCTGCACTTGTTTTCCAAAGTTGTCACTTCACAGGTGAACCTGGATTAGAATCAATTTCACCCAAAGTATCTTTCCTAGGAAGGCCATGGAAAGCATACTCCAAAGTTGTGATAATGGATTCAGTCATAGATGATATCTTTCTCCCGGAAGGTTACCATGCATGGATGGGAAATGCATTTACGGATACATGTACATTTTACGAGTATAATAACAAAGGTCCTGGCGCTGACACAAAAGCAAGAGTGAAATGGCCTAATGTTAAAACTATAACTGCTGCTGAGGCTGCTGCTTTTTACCCTGGTAAATTCTATGAGGGTTCACCCTGGATGACGAGTTCTGGGGTACCTTGTTCCCTTGGTCCTATGAGCGGTGTTTCTGCTGGTTTTGCAGCTTCGTCTTCTCCAATTTCAGCTTCTGGACCTTCTTCAGCTTCTGGACCTTCTTCGTCTACTTAA 1773 0.4196 MEGMRDNINGSRNEKKRFALVGVFYILLIVVVHTDATRGGLDEPGELEILCQSNPDICNPTTLGTLGRVFSGTSNTKDGIKKAFIAAAEELSKHTNNPSLFTELVKDNMTRQAMRICNEVMDNAIDGVNKSVGELDRCDSNSLSEIVFDLKVLITATLTDQQTCLDSFEKVDTKASQRMAQVLSASMKLSNAAIDMLNSLSGLNKDFGQVPSGGFNRKTLPDESTARVDGVPTWVSERQQRLLAETTVKPNVVVAQDGSGEFKTVAEALKTVPANNAKPFVIHVKAGVYKEVVNIPMEMNYVTIIGDGPTKTKFTGSLNFVDGVLIYHSATVAVNGANFVAKDIGIENTAGPSKKQAVALRVSGDMAVFYNCQIDGYQDTLFAQSLRQYFRDCIISGTVDFIFGDPFGVFQNCKIIVRKPLTDQANLVIAGGRLTSSSSAALVFQSCHFTGEPGLESISPKVSFLGRPWKAYSKVVIMDSVIDDIFLPEGYHAWMGNAFTDTCTFYEYNNKGPGADTKARVKWPNVKTITAAEAAAFYPGKFYEGSPWMTSSGVPCSLGPMSGVSAGFAASSSPISASGPSSASGPSSST 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09385 590 ProSitePatterns Pectinesterase signature 1. 276 295 IPR018040 -
Vifa1g09385 590 Gene3D - 248 561 IPR012334 -
Vifa1g09385 590 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 202 IPR035513 -
Vifa1g09385 590 Pfam Pectinesterase 251 545 IPR000070 GO:0030599|GO:0042545
Vifa1g09385 590 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 201 IPR035513 -
Vifa1g09385 590 SUPERFAMILY Pectin lyase-like 246 558 IPR011050 -
Vifa1g09385 590 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Vifa1g09385 590 MobiDBLite consensus disorder prediction 568 590 - -
Vifa1g09385 590 CDD PMEI-like_3 50 202 - -
Vifa1g09385 590 PANTHER PECTINESTERASE 27 550 - -
Vifa1g09385 590 Pfam Plant invertase/pectin methylesterase inhibitor 83 190 IPR006501 GO:0004857
Vifa1g09385 590 SMART PMEI_2 42 196 IPR006501 GO:0004857
Vifa1g09385 590 FunFam Pectinesterase 4 248 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09385 Vifa-Chr1 1482891914 1482893880 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09385 50 555 Carbohydrate Esterase AT5G49180 44.747 6.67e-149 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09385 K01051 - gmx:100784682 615.92