Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09382 ATGGAAGGAGCGCGTGATAATATAAACCGTGTTCGTAACCAAAAGAAAAGGTTTGCAGTTGTTGGTTTCTCTTCCATTCTCCTTATCGCCGTGATCGGATTTGTCGCGGTCGGTTTAACGCACAGCGGCTTAAGAGAACCAGGGGAACAAAATGGAAAAATATTTACAACACAAAGGGATTTTGAAATGAGTTGTCTAAAAAACCCGGAATGTCATACGAAAGTAGGAAAGTTGGTTAGCGGAGCAAGAAACATAAAAGAACGTCTGAAAAACACATTCATTGAAGAAGCCGGGGAGTTAATGAAAAACATGAACAATCCAGCTCTTTATAATGAATTGGTAAAAGACAACATGACGAGACAAGCGATGCGAATTTGCCACGAAGTAATGGATAATGCTGTTGATGGAGTTAATAAATCTGTTGGGGAATTAGACAGATTTGATTTCAATAGGTTGAATGACTTTATTTTCGATCTTCAAGTTTGGATGACTGCTACACTTACAGATCAACAAACTTGTTTGGATAGTTTAGAGAAAGCAGACACAAAAGCTAGTCAGAGAATGGCTCAGGTTATGAGCACTTCTATGAAATTAAGCAATGATGCTATTGACATGCTTAATTCACTTTCTGGATTGCATAAGAATTTTGGCCCAACACCGAGTGGTTTTAATAGAAGGATTTTATCCGATGAATCCACAACGCGTGTTGATAGTTTTCCAACATGGGTTAGGGAAGGACAGAGACGTCTTCTCGCTGATCCAAGTGTTAAGTCAGATGTTGTTGTGGCGCAAGATGGTAGTGGACAATTTAATATGTATGAGAATTGA 828 0.3889 MEGARDNINRVRNQKKRFAVVGFSSILLIAVIGFVAVGLTHSGLREPGEQNGKIFTTQRDFEMSCLKNPECHTKVGKLVSGARNIKERLKNTFIEEAGELMKNMNNPALYNELVKDNMTRQAMRICHEVMDNAVDGVNKSVGELDRFDFNRLNDFIFDLQVWMTATLTDQQTCLDSLEKADTKASQRMAQVMSTSMKLSNDAIDMLNSLSGLHKNFGPTPSGFNRRILSDESTTRVDSFPTWVREGQRRLLADPSVKSDVVVAQDGSGQFNMYEN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09382 275 CDD PMEI-like_3 94 211 - -
Vifa1g09382 275 SMART PMEI_2 56 205 IPR006501 GO:0004857
Vifa1g09382 275 Pfam Plant invertase/pectin methylesterase inhibitor 106 200 IPR006501 GO:0004857
Vifa1g09382 275 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 210 IPR035513 -
Vifa1g09382 275 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 108 210 IPR035513 -
Vifa1g09382 275 PANTHER PECTINESTERASE 32 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09382 Vifa-Chr1 1482359799 1482360626 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09382 14 270 Carbohydrate Esterase AT3G05610 28.832 9.97e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09382 K01051 - psat:127109037 279.256