Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09381 ATGGAAGGAGCGCGTGATAATATCAACCGTGTTCGTAGCCAAAAGAAAAGGTTTGCAGTTGTTGGTTTCTCTTCCATTCTCCTTATCGCCGTGATCGGATCTGTCGCGGTCGGTATAACGCGCAGCGGCTTAAGAGAACCAGGGGAACAAAATGGAAAAATATTTACAACACAAAGGGAAGTTGACAGGCTATGTCTAAAAAACCCAGAATGTCATACGAGAGTAGGAAGAGTGTTTAGCGGAACAAGTAACACAAAAGATGGTATAAAAAAAGTGTTCATTGCAGCAGCCGGGGAGTTATCGAAACACACAAACAATCCATCTCTTTTTACTGAATTGGTAAAAGACAACATGACGAGACAAGCGATGCGAATTTGCCACGAAGTATTGGATAATGCTGTTGATGGAGTTAATAAATCTGTTGGGGAATTAGACAGATTTGATTTCAATAGGTTGAATGACTTTATTTTCGATCTTCAAGTTTGGATGACTGCTACACTTACAGATCAACAAACTTGTTTGGATAGTTTAGAGAAAGCAGACACAAAAGCTAGTCAGAGAATGGCTCAGGTTATGAGCACTTCTATGAAATTAAGCAATGATGCTATTGACATGCTTGATTCACTTTCTGGATTGCATAAGAATTTTGGCCGAACAATGAGTGGTTTTAATAGAAGGACTTTATCCGATGAATCAACGAGGCGTGTTAATAGTTTTCCAACATGGGTTAGCGAGGGACAAAGACGTCTTCTCGCTGATCCGAGTGTTAAGCCAGATGCTATTGTGGCGCAAGATGGTAGTGGACAGTTTAAAACGGTCGCTGAAGCTCTTAAGACTGTTCCCGCGAATAATGCAAAACCTTTTGTCATTTATGTTAAGGCCGGTGTTTATAAAGAGGTTGTTAATATTCCTCTAAAGATGGATTATGTGACAATCCTAGGTGATGGTCCTACAAAAACCAAATTCACAGGTAGCCTCAACTTTGTTGATGGCGTCCTAACTTATGATAGTGCAACAGTTGGTGTGAATGGTGCAAACTTTGTGGCGAAGGATATAGGCATTGAAAACACAGCAGGACCGAGTAAACAGCAAGCAGTAGCACTAAGAGTTTCAGGAGACATGGCAGTATTCTACAACTGTCAAATAGATGGTTACCAAGACACACTCTTCGCCCAATCCCTACGCCAATACTTTCGCGATTGTATCATCTCGGGTACAATCGACTTTATATTCGGCGACCCCTTCGGAGTTTTCCAAAACTGCAAAATTATAGTTAGAAAACCATTAACAGGCCAATCAAATTTAGTAACAGCTGGTGGAAGACTCACATCAAGCAGCGCAGGTGCACTTGTTTTCCTAAGTTGCCACTTTTCAGGTGAACCAGAATTAGCATCGATGTCACCGAAAATATCTTACCTAGGAAGACCATGGAAAGCATATTCCAGAGTTGTGATAATGGATTCAGTCATAGATGACATCTTTCTCCCCCAAGGTTACGAAGCATGGATGGGAGTTGATTTTACCGACACATCTACTTTTTATGAGTATAACAATAAAGGTCCTGGCGCTGACACGAAAGCAAGAGTGAAATGGCCTAATGTTAAAACTATAACTGCTAATGAGGCTGCTGCTTTTTACCCTGGTAAATTTCTTCAGGTTTCTGGTTCACCTTGGATGACGAGTTCTGGGGTACCTTGTTCCCTTGGTCCTATGAGCGGTGGTTCTGCTGGTTCTGCGTCTTCGTCTTCTCCAGTTATTGCGTCTGCACCTTCTCAGTCTTCTTCATCTTCTCCAGTTACTGCGTCTGCACCTTCTCAGTCTTCTTCATCTTCTCCAGTTACTGCGTCTGCACCTTCTCAGTCTTCTTCGCCTCCTTCGTCTTCTCCAGTTAATGCGTCTACGCCTTCTAAGTCTTCTCCACCTTCCGAGGAGTCTAAGTCTTCTGAAGAATCTAAGTCTTCTTCGTCTTCTGAGGAATCTAAGTCTTCTGAGAAGTCCGAGGAGTCTTGA 2010 0.4234 MEGARDNINRVRSQKKRFAVVGFSSILLIAVIGSVAVGITRSGLREPGEQNGKIFTTQREVDRLCLKNPECHTRVGRVFSGTSNTKDGIKKVFIAAAGELSKHTNNPSLFTELVKDNMTRQAMRICHEVLDNAVDGVNKSVGELDRFDFNRLNDFIFDLQVWMTATLTDQQTCLDSLEKADTKASQRMAQVMSTSMKLSNDAIDMLDSLSGLHKNFGRTMSGFNRRTLSDESTRRVNSFPTWVSEGQRRLLADPSVKPDAIVAQDGSGQFKTVAEALKTVPANNAKPFVIYVKAGVYKEVVNIPLKMDYVTILGDGPTKTKFTGSLNFVDGVLTYDSATVGVNGANFVAKDIGIENTAGPSKQQAVALRVSGDMAVFYNCQIDGYQDTLFAQSLRQYFRDCIISGTIDFIFGDPFGVFQNCKIIVRKPLTGQSNLVTAGGRLTSSSAGALVFLSCHFSGEPELASMSPKISYLGRPWKAYSRVVIMDSVIDDIFLPQGYEAWMGVDFTDTSTFYEYNNKGPGADTKARVKWPNVKTITANEAAAFYPGKFLQVSGSPWMTSSGVPCSLGPMSGGSAGSASSSSPVIASAPSQSSSSSPVTASAPSQSSSSSPVTASAPSQSSSPPSSSPVNASTPSKSSPPSEESKSSEESKSSSSSEESKSSEKSEES 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09381 669 CDD PMEI-like_3 80 211 - -
Vifa1g09381 669 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
Vifa1g09381 669 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 211 IPR035513 -
Vifa1g09381 669 MobiDBLite consensus disorder prediction 643 669 - -
Vifa1g09381 669 FunFam Pectinesterase 4 256 570 - -
Vifa1g09381 669 SMART PMEI_2 56 205 IPR006501 GO:0004857
Vifa1g09381 669 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Vifa1g09381 669 MobiDBLite consensus disorder prediction 571 642 - -
Vifa1g09381 669 MobiDBLite consensus disorder prediction 571 669 - -
Vifa1g09381 669 Pfam Plant invertase/pectin methylesterase inhibitor 105 199 IPR006501 GO:0004857
Vifa1g09381 669 Pfam Pectinesterase 259 552 IPR000070 GO:0030599|GO:0042545
Vifa1g09381 669 Gene3D - 256 571 IPR012334 -
Vifa1g09381 669 PANTHER PECTINESTERASE 32 560 - -
Vifa1g09381 669 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 209 IPR035513 -
Vifa1g09381 669 SUPERFAMILY Pectin lyase-like 256 567 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09381 Vifa-Chr1 1482192670 1482194881 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09381 14 663 Carbohydrate Esterase AT3G05610 38.117 3.05e-151 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09381 K01051 - gmx:100784682 644.039