Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09377 ATGGAAGGAGCGCGTGATAATATGAACCGTGTTCGTAACCAAAAGAAAAGGTTTGCAGTTGTTGGTTTCTCTTCCATTCTCCTTATCGCCGTGATCGGATCTGTCGCGGTCAGTTTAACGCGCAGCGGCTTAAGAGAACCAGGGGAACAAAATGGAAAAATATTTACAACACAAAGGGATTTTGAAATGAGTTGTCTATCAAACCCGGATAAATGTAAAACGAGAGTAGGAAAAATGTTTAGCGGAGCAAGAAACCTAAAAGAACGTATGAAAAAGGCATTCATTGATAACGCCGGGGAGTTAATGAAAAACATAAACAATCCAGCTCTTTCTAATGAATTGGTAAAAGACAACATGACCAGACAAGCAATGCGAATTTGCAACGAAGTGATGGAAAATTCTGTTGATGGAGTTAATAAATCTGTTGGGGAATTAGACAGATTTGATTTCAGTAGGTTAAGAGACTTTGTTTTCGATCTTAAAGTTTGGATGACTGCTACACTTACAAATCAACAAACATGTTTGGATAGTTTTGAGAAAGCAGACTCAAAAGCTAGTCAGAGAATGGCTCAGGTTTTGAGCGCTTCTATGAAATTAAGCAATATTGCTATTGAGATGCTTAGTGCAGTTTCTGGAAAGCATAAGTATGTTGACCAAGTCCCAGGTGGTTTTAATAGGAGGACTTTATCCGATGAATCTAAAAAACTTGTTGATAGTTATCCTACATGGGTTAGCGAAGGACAAAGACGTCTTCTTGCTGATTCGAGCGTTAAGCCAGATGCTGTTGTGGCGCAAGATGGCAGTGGACAATTTAAAACTGTCAAGGAAGCTCTTACGAAGGTTCCGGCGAATAATGCAAAACCTTTTGTCATTTATGTTAAGGCTGGTGTTTATAAAGAGGTTGTTAATATTCCTCTAAAGATGGATTATGTGACAATCCTAGGTGATGGTCCTACAAAAACCAAATTCACAGGTAGCCTCAACTTTGTTGATGGCGTCCTAACTTATGATAGTGCAACAGTTGGTGTGAATGGTGCAAACTTTGTGGCGAAGGATATAGGCATTGAAAACACAGCAGGACCGAGTAAAAAGCAAGCAGTAGCACTAAGAGTTTCAGGAGACATGGCAGTATTCTACAACTGTCAAATAGATGGTTACCAAGACACACTCTTCGCCCAATCCCTACGCCAATACTTTCGCGATTGTAGCATCTCAGGCCAAGCCAATTTAGTAACAGCTGGTGGAAGACTCACATCGAGCAGCTCAGGTGCACTTGTTTTCCAAAGTTGTCACTTCTCAGGTGAACCTGAATTAGTATCGATGTCACCCAAAATATCATTTCTAGGAAGACCATGGAAAGCATACTCCAGAGTTGTGATAATGGATTCAGTTATAGATGACATCTTTCTCCCCGAAGGTTACGAAGCATGGAGTGGAAATGCGTTTACCGACACATGTACTTTTTATGAGTATAACAATAAAGGTCCTGGCGCTGATACGAAAGGAAGAGTCAAATGGCATAATGTTAAAACTATTACTGGCAATGAGGCTGCTGATTTTTACCCTGGTAAATTTCTTCAGGTTTCTGGTTCACCTTGGATGACGAGTTCTGGGGTACCTTGTTCCCTTGGTCCTATGAGCGGTGGTTCTGCTGGTTCTGCGTCTTCGTCTTCTCCTGTTATTGCGTCTGCACCTTCTCAGTCTTCTTCGCCTTCTTCATCTTCTCCAGTTGCTGCGTCTGGGCCTTCTAAGTCTTCTTCGCCTTCTAAATCTTCTGAAGAGTCTAAGGAGTCTAAATCTTCTTCGCCTTCTAAGTCTTCTGAGAAGTCCAAGAAGTCTGAGGAGTCTTGA 1851 0.4138 MEGARDNMNRVRNQKKRFAVVGFSSILLIAVIGSVAVSLTRSGLREPGEQNGKIFTTQRDFEMSCLSNPDKCKTRVGKMFSGARNLKERMKKAFIDNAGELMKNINNPALSNELVKDNMTRQAMRICNEVMENSVDGVNKSVGELDRFDFSRLRDFVFDLKVWMTATLTNQQTCLDSFEKADSKASQRMAQVLSASMKLSNIAIEMLSAVSGKHKYVDQVPGGFNRRTLSDESKKLVDSYPTWVSEGQRRLLADSSVKPDAVVAQDGSGQFKTVKEALTKVPANNAKPFVIYVKAGVYKEVVNIPLKMDYVTILGDGPTKTKFTGSLNFVDGVLTYDSATVGVNGANFVAKDIGIENTAGPSKKQAVALRVSGDMAVFYNCQIDGYQDTLFAQSLRQYFRDCSISGQANLVTAGGRLTSSSSGALVFQSCHFSGEPELVSMSPKISFLGRPWKAYSRVVIMDSVIDDIFLPEGYEAWSGNAFTDTCTFYEYNNKGPGADTKGRVKWHNVKTITGNEAADFYPGKFLQVSGSPWMTSSGVPCSLGPMSGGSAGSASSSSPVIASAPSQSSSPSSSSPVAASGPSKSSSPSKSSEESKESKSSSPSKSSEKSKKSEES 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09377 616 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 209 IPR035513 -
Vifa1g09377 616 PANTHER PECTINESTERASE 32 407 - -
Vifa1g09377 616 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 211 IPR035513 -
Vifa1g09377 616 Gene3D - 254 544 IPR012334 -
Vifa1g09377 616 MobiDBLite consensus disorder prediction 546 589 - -
Vifa1g09377 616 MobiDBLite consensus disorder prediction 546 616 - -
Vifa1g09377 616 SMART PMEI_2 56 206 IPR006501 GO:0004857
Vifa1g09377 616 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
Vifa1g09377 616 Pfam Pectinesterase 260 407 IPR000070 GO:0030599|GO:0042545
Vifa1g09377 616 MobiDBLite consensus disorder prediction 590 616 - -
Vifa1g09377 616 Pfam Plant invertase/pectin methylesterase inhibitor 86 204 IPR006501 GO:0004857
Vifa1g09377 616 SUPERFAMILY Pectin lyase-like 257 542 IPR011050 -
Vifa1g09377 616 CDD PMEI-like_3 95 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09377 Vifa-Chr1 1481541324 1481543458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09377 14 540 Carbohydrate Esterase AT5G49180 37.842 1.56e-130 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09377 K01051 - gmx:100784682 583.178