Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09374 ATGTGTTACGATCGACTCAGAAGCATTGTTGGTCGTATACAGACTCTGTTTGGCAACTTGGCTACTCAAGGGTATGATGTGTATGGGAACCTGCTCAGTCTTCTTGGATCGCATCATGTGACTCTGGAGATGGAAATGCCTGCAAGAACATTCTTGAATTGGTACAAAAGAGCATATTACACTGCATATGCATTCAACATGCGACCTGTTAGTCATCATCCATGCCATAAGCCTTTTGTATTTTACTTCTCAAAGGCAAACTACAATGATACAATGCAACAAACACTGACCAAATACGAAAAGCATCATGTCCCTAACCCAGAATGTCGATGGAAGATGGCCAACCCTTCTTCTATTGAGCGAATAGAGGTACATAAGAAGCTAGATCCACAACTATGCGATAGGTTTCCAAGGAGAAGCTGTTGCAGAGTTATGAAGTCGAAGAAGAAAGGAACCATGGTGATACATGTGGGTGTGGTGTGTAGGGAAAATGAGGTAAGAACCTTTCAATCATTACATCTCAACCTGAGTCAGGTTTCAAAAGCTACCCCTAATTTTTCAGAAACATTACAAATAGGAGAAGGAGGTTTTGGAATTGTCTACAGGGCTAATTTAGATGATGGCCTGGTCGTGGCTGTAAAACGCGCAAAAAGGGAACATTTTGAGAGTTTGAGAACAAAATTCAGCTGTGAAGTTGAACTCTTGGCCAAAATTGATCATCGAAACCTGCTGAAACTACTTTGTTATATTGAAAAAGGAAACGAACGTATCCTTATTGTAGAGTTTGTGCCAAATGGTACTCTTCAAGAACATTTGGATAATTTGTTCGGGAAAATCCTGGATTTCAATCAGCGTCTTGAAATCGCAATTGATTTTGCTCATGGATTGACCTATTTGCATCTGTATGCTGAAAAACAAATTATCCATCGAGATGTGATGATTTTGGATTTAACTTACCATCTCACTCCCAAAAGTGATGCTTACTCCTTTGGAATTTCCCTTTTAGAAATTCTTACACCAGAAAAACAAATTATCCATCGAGATGTGATGATTTTGGATTTAACTTACCATCTCACTCCCAAAAGTGATGCTTACTCCTTTGGAATTTCGCTTTTAGAAATTCTGACTGACAGCCGTCCTGTGGAAATGAAAAAAACTCCTAAGAGCAAGATACATTAA 1179 0.391 MCYDRLRSIVGRIQTLFGNLATQGYDVYGNLLSLLGSHHVTLEMEMPARTFLNWYKRAYYTAYAFNMRPVSHHPCHKPFVFYFSKANYNDTMQQTLTKYEKHHVPNPECRWKMANPSSIERIEVHKKLDPQLCDRFPRRSCCRVMKSKKKGTMVIHVGVVCRENEVRTFQSLHLNLSQVSKATPNFSETLQIGEGGFGIVYRANLDDGLVVAVKRAKREHFESLRTKFSCEVELLAKIDHRNLLKLLCYIEKGNERILIVEFVPNGTLQEHLDNLFGKILDFNQRLEIAIDFAHGLTYLHLYAEKQIIHRDVMILDLTYHLTPKSDAYSFGISLLEILTPEKQIIHRDVMILDLTYHLTPKSDAYSFGISLLEILTDSRPVEMKKTPKSKIH 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09374 392 Pfam Protein of unknown function, DUF604 33 142 IPR006740 -
Vifa1g09374 392 Pfam Protein tyrosine and serine/threonine kinase 191 312 IPR001245 GO:0004672|GO:0006468
Vifa1g09374 392 Gene3D Phosphorylase Kinase; domain 1 151 262 - -
Vifa1g09374 392 SUPERFAMILY Protein kinase-like (PK-like) 170 342 IPR011009 -
Vifa1g09374 392 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 153 312 IPR047117 -
Vifa1g09374 392 ProSiteProfiles Protein kinase domain profile. 186 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09374 392 Gene3D Transferase(Phosphotransferase) domain 1 263 314 - -
Vifa1g09374 392 ProSitePatterns Protein kinases ATP-binding region signature. 192 214 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09374 Vifa-Chr1 1481147104 1481149642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09374 43 166 Glycosyltransferase AT4G23490 58.871 6.23e-47 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vifa1g09374 PK_Tyr_Ser-Thr 1.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09374 - - aprc:113845864 286.574