Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09372 ATGGAAAAAAACAATGAAAACCCGAATATCCCCAACAACTTCGACGCAAAGAGTTACAACCTCAGTGGAAAAATCATGCTCTGCGCCATAGTCTTTCTCTTATTCGTCATCGTTCTAATGCTCTGTCTCCATATCTACGCTCGCTGGTACCTTCTCCAATCTCGCCGCCGTCGCAACCGTCTCCGCCGTCGCAGTCAGCTTGTTTTCTTCACCGACAATACAACAGCCTCCGTCACTACAACCCGCGGCCTCGACGTCTCCGTCATCGCTAAACTACCGTTATTCTTATACAGTCCGGAAACTCACCCGGAAAACGCCACGGAGTGTGCTGTTTGTTTGTCGGAGTTTGAACCCGGGGAAACTGGTAGGGTATTACCCAAATGTAACCATAGTTTCCACACAGAATGTATTGACATGTGGTTTCATTCTCATTCCACGTGTCCACTTTGTCGCGCACCGGTTGAGACCACATTTGAACCGCAACCCGAGGTTGTTATAACGGTTTATGAACCGGGAACCGGTTCGGGTTCGAGTCACGGTTCGGTTTTGGAAAATGAGAATTTGAAACGGACCGGGAAAGAGATTTGTTCGAGTTCGGTTGGGTTGAGAAGAAAGCCGTCTTTTAAGGGAGTGACCGTTGAGGTGCCTACGAGGAATGAAGAGTGTTGTGACTCGCCGTCGTCGTTTCGGTCGCCGATGAGTCGGATGTTGTCGTTTAAGAGGATGCTTAGTAGGGAATGGAAAGGAAGCGTTGTTTCTCCTTCGTCTTGTGGTGGTGGTGGTGGTGGTTGTAGCTCGGTAGCTGAGTTGAACTTGAAGGTGGACGAGGTGAGACTCAGTGAGTTGAGTTGA 852 0.493 MEKNNENPNIPNNFDAKSYNLSGKIMLCAIVFLLFVIVLMLCLHIYARWYLLQSRRRRNRLRRRSQLVFFTDNTTASVTTTRGLDVSVIAKLPLFLYSPETHPENATECAVCLSEFEPGETGRVLPKCNHSFHTECIDMWFHSHSTCPLCRAPVETTFEPQPEVVITVYEPGTGSGSSHGSVLENENLKRTGKEICSSSVGLRRKPSFKGVTVEVPTRNEECCDSPSSFRSPMSRMLSFKRMLSREWKGSVVSPSSCGGGGGGCSSVAELNLKVDEVRLSELS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09372 283 CDD RING-H2_EL5-like 108 151 - -
Vifa1g09372 283 SMART ring_2 109 150 IPR001841 -
Vifa1g09372 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 159 IPR013083 -
Vifa1g09372 283 Pfam Ring finger domain 108 151 IPR001841 -
Vifa1g09372 283 SUPERFAMILY RING/U-box 88 163 - -
Vifa1g09372 283 SMART FANCL_C_2 105 159 - -
Vifa1g09372 283 FunFam E3 ubiquitin-protein ligase ATL6 72 157 - -
Vifa1g09372 283 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Vifa1g09372 283 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 17 156 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09372 Vifa-Chr1 1480741175 1480742026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09372 1 250 Rapid Response to Elicitors AT3G16720 49.653 1.26e-65 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09372 - - gsj:114368044 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09372 1 1480741175 1480742026 Vifa1g09372 1 1480741175 1480742026 ECH
Vifa4g03978 4 1272949983 1272950795 Vifa1g09372 1 1480741175 1480742026 PCT