Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09367 ATGTTCATGAATGCTGATCTTTCTTCCTCCTATTATCATGTCTGGCCTATAGAAGTTGACTTGAAATTTTTGGAACCCGTCGGGCGAGAACTTAAGGCGCTTGGGAAGGATGCTGAGGGAATTTCAGATGCTGAAGTTGTTCTCATGTCAGAAGAAGTTGTTTCTCATGCCCTTGAAACCATTATTGAAGAAGAACATGTTGCACCAAAAGTTGAAAAAGTTAATGACACAGATACATCTAGCCATTATGGTCTAGATTCAGGATTCTACATGTCATCTTTTACAGCAACAATTTTCGTTGTTTCCCTTGTCACTCTTGGAGTTTTACTTATTACTTTGCTGGTTTCTTTGGTGATTATGCTGCAATCATGTCAAAGTAAAAGTACTGGAGTTATTGAACTTGTGAATATGAATAATTACTACAGTTATTGCAGGGTGTATTCTCTGCATGCTGAGATCAATAGGTTAGAGAGATATGATCTTCCAAACATATGTAGAGATCTGACTATACATTATATCAAAGGAGGGCATTATGCCAAAGAGTTGAATTTAATTGTGTCTATGATCGATGATTACTTCAAGAATCTGAGACCTTCAGACAATGGTTTGGATGTGGTGTTGTTGGATATAGATGATATTGTTCCTCCAAATTCGTATCAGAGGTTTCATAGGGACGGCATTAGCAACTGTGTCAAAGAGGCAAAACATGTAAAGCTCATGTTTGTTTTAAGATTATACATGAACCTTCAAACTGATGGGTGGCCTATAATTTTGGTATCAAGAGAACCTGAAACGTACCAAAATGTCACCATTAATCATCTTGTTTCTGCAGGATTTAGAGGTTGGTCTTCCTTGATGATGAGAACAGAAGATTCAGAGTCTACTAAAGGAAATGAGTACTTTTCTAGACGTCTGCTTTCGTATCCATCAGGTCATTTCTTCCCTGCAGCTGATCAGGTCGGGCAAGTTAAGTGTGGGAGTTGTACGCTATTGCTAATGTATCCATATGGCGCTTCACAGGTCAGGTGTTCATCATGCCGGTTTGTGACAGAAATCGGGGTGGTAGTGTGTGTACCTTCATCAAGGAGTTATGCATCAAGTCAGCTAACATATCAGAGGTTATATTCCTAG 1131 0.389 MFMNADLSSSYYHVWPIEVDLKFLEPVGRELKALGKDAEGISDAEVVLMSEEVVSHALETIIEEEHVAPKVEKVNDTDTSSHYGLDSGFYMSSFTATIFVVSLVTLGVLLITLLVSLVIMLQSCQSKSTGVIELVNMNNYYSYCRVYSLHAEINRLERYDLPNICRDLTIHYIKGGHYAKELNLIVSMIDDYFKNLRPSDNGLDVVLLDIDDIVPPNSYQRFHRDGISNCVKEAKHVKLMFVLRLYMNLQTDGWPIILVSREPETYQNVTINHLVSAGFRGWSSLMMRTEDSESTKGNEYFSRRLLSYPSGHFFPAADQVGQVKCGSCTLLLMYPYGASQVRCSSCRFVTEIGVVVCVPSSRSYASSQLTYQRLYS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09367 376 PANTHER ACID PHOSPHATASE-LIKE PROTEIN 107 303 - -
Vifa1g09367 376 Pfam HAD superfamily, subfamily IIIB (Acid phosphatase) 136 295 IPR005519 -
Vifa1g09367 376 Pfam LSD1 zinc finger 325 349 IPR005735 -
Vifa1g09367 376 NCBIfam zinc finger domain, LSD1 subclass 322 350 IPR005735 -
Vifa1g09367 376 Gene3D - 139 307 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09367 Vifa-Chr1 1480513093 1480516905 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vifa1g09367 Acid_phosphat_B 2.1e-11 CL0137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09367 - - gmx:100798657 317.775