Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g09348 | ATGGCTACCTATTTTATGTTCCGTTTTGTTTTATTATCCTCTTATTTTCTGCTTCTTCTCTCTGCTGCATCTTATTCAGAATACGATAAAGAATGTGTAATAGGAAGAAACACTTGGTGTGGATATCTTGGGGAATTCCCCCTTCTCTCCTCCTTCACTACCGTTAATAAAAGAGAATGTGGGTTTTACATAAGTGGTTGTGACAATAACACTTCGGAGAAAAAAATCCTTCTCAAAAACCAAATGTATATAGTTGTTAGCATGAATCATATGCACAATTCAATTATCATCTATGACCCAAGTTCTTCTGAATTAGATTTAGAATCATTATTCCGTTTTGCCTATTTTCCCATTTCCATTTTTACCAGGTCCAGTGGCTGTTCTATTGCAGGAGGCTTATGTCTATCAGATCAGGAAATTTTAACTATCAATTGTGTCTCTGAAAACGAACAGCATTTTAAAACTTTGAGCGAAGATTATTCCCGTCTTGAAAGAAAGGAACGGCATTTGAAAGCTGCAGTAAGAGGTTTATCTATTGGACTGGCAACTGTGATAGCAATTGCCTTGTTTGTTATAATTTTACTTTTGTACTATCGGAGAATCAAATCTTCAGGCCTCAAAAACCAATCAAGAGCTAATTATCGCGGTCTTTCAAGAAATACAACAATCCCAGAAAGTGGAGCTGTCTACTTGGGGATTCCTGTCTTCTCCTATGAGGAGCTCCAAAAGGCAACAGACAATTTTAATCAAGCTAGAGAACTTGGAGAAGGAGGCTTTGGGACTGTTTACTACGGAAAGCTTGGAGATGGACGTGAAGTTGCAGTGAAGCGCCTATTCGAGCGTAGCTACAGACCAGTAGAATCATTCACAAACGAAATTCAGATCCTCACACGCATGCGCCACAGAAATCTTGTATCCCTTTATGGCTGCACTTCACGCCACAGTCGTGAGTTGCTGTTAGTGTATGAATATATCCCGAACGGCACCGTCAATAGCCATCTCCACAACAAAAAAGAAAACCAAAGCTCATCTTTACCCTGGGCTGTGAGAATGAAAATAGCCATAGAAACTGCTGGTGCATTAACTTATCTCCATGCTTCTGATGTCATTCACCGAGACGTGAAAACCAGCAACATTCTCCTTGACAACAGTTTTTGTGTTAAGGTTGCTGATTTTGGTCTTTCGAGACTGTACCCTAATGATGTCACTCACGTCTCCACAGCGCCTAGAGGAACACCGGGCTATGTTGATCCAGAATACCGGTTATGTTACCAGCTAACAATTGATTTCTCAAGGGATAGAGATGACATTAAGTTGGCAAATCTAGCAATAAGGAAGATTCAGAGAAGGGAATTTTCTGAGTTGATTGATCCTTCTCTTGGTTTTCAGACAGATGAGAATTTAAAAAATGTGATAAGTTGTGTTGCAGAATTGGCCTTCCGGTGTTTGCAAGATGAGAAGGAATTGAGGCCCTCTATGAGTGAAGTATTTGAGGTACTGCAGAAAATTGAAAGTGGCAAAGGTGACGCGGAGAATTATGAGGGGATTGATTTTCATCATGGAATAGGAGTAGCACAAAGTTTTGCACATCCATCACTTACAAACACTTGGATGAAGCCACAGCGCCATCAACAAACACTTTGA | 1644 | 0.4009 | MATYFMFRFVLLSSYFLLLLSAASYSEYDKECVIGRNTWCGYLGEFPLLSSFTTVNKRECGFYISGCDNNTSEKKILLKNQMYIVVSMNHMHNSIIIYDPSSSELDLESLFRFAYFPISIFTRSSGCSIAGGLCLSDQEILTINCVSENEQHFKTLSEDYSRLERKERHLKAAVRGLSIGLATVIAIALFVIILLLYYRRIKSSGLKNQSRANYRGLSRNTTIPESGAVYLGIPVFSYEELQKATDNFNQARELGEGGFGTVYYGKLGDGREVAVKRLFERSYRPVESFTNEIQILTRMRHRNLVSLYGCTSRHSRELLLVYEYIPNGTVNSHLHNKKENQSSSLPWAVRMKIAIETAGALTYLHASDVIHRDVKTSNILLDNSFCVKVADFGLSRLYPNDVTHVSTAPRGTPGYVDPEYRLCYQLTIDFSRDRDDIKLANLAIRKIQRREFSELIDPSLGFQTDENLKNVISCVAELAFRCLQDEKELRPSMSEVFEVLQKIESGKGDAENYEGIDFHHGIGVAQSFAHPSLTNTWMKPQRHQQTL | 547 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g09348 | 547 | Gene3D | Phosphorylase Kinase; domain 1 | 224 | 324 | - | - | |
Vifa1g09348 | 547 | Gene3D | Transferase(Phosphotransferase) domain 1 | 325 | 425 | - | - | |
Vifa1g09348 | 547 | Gene3D | Transferase(Phosphotransferase) domain 1 | 426 | 513 | - | - | |
Vifa1g09348 | 547 | FunFam | receptor-like protein kinase FERONIA | 212 | 324 | - | - | |
Vifa1g09348 | 547 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 369 | 381 | IPR008271 | GO:0004672|GO:0006468 | |
Vifa1g09348 | 547 | ProSiteProfiles | Protein kinase domain profile. | 248 | 503 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g09348 | 547 | SUPERFAMILY | Protein kinase-like (PK-like) | 227 | 503 | IPR011009 | - | |
Vifa1g09348 | 547 | ProSitePatterns | Protein kinases ATP-binding region signature. | 254 | 276 | IPR017441 | GO:0005524 | |
Vifa1g09348 | 547 | Pfam | Protein kinase domain | 249 | 420 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g09348 | 547 | Coils | Coil | 146 | 166 | - | - | |
Vifa1g09348 | 547 | PANTHER | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 | 120 | 512 | IPR044652 | GO:0004672 | |
Vifa1g09348 | 547 | Coils | Coil | 547 | 547 | - | - | |
Vifa1g09348 | 547 | SMART | serkin_6 | 248 | 500 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g09348 | Vifa-Chr1 | 1476336259 | 1476338791 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g09348 | 176 | 514 | Receptor kinase-like Gene Family | AT1G25390 | 52.893 | 5.01e-123 | 373 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_WAK_LRK10L-1 | Vifa1g09348 | Pkinase | 6.1e-37 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g09348 | - | - | var:108334729 | 488.804 |