Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09348 ATGGCTACCTATTTTATGTTCCGTTTTGTTTTATTATCCTCTTATTTTCTGCTTCTTCTCTCTGCTGCATCTTATTCAGAATACGATAAAGAATGTGTAATAGGAAGAAACACTTGGTGTGGATATCTTGGGGAATTCCCCCTTCTCTCCTCCTTCACTACCGTTAATAAAAGAGAATGTGGGTTTTACATAAGTGGTTGTGACAATAACACTTCGGAGAAAAAAATCCTTCTCAAAAACCAAATGTATATAGTTGTTAGCATGAATCATATGCACAATTCAATTATCATCTATGACCCAAGTTCTTCTGAATTAGATTTAGAATCATTATTCCGTTTTGCCTATTTTCCCATTTCCATTTTTACCAGGTCCAGTGGCTGTTCTATTGCAGGAGGCTTATGTCTATCAGATCAGGAAATTTTAACTATCAATTGTGTCTCTGAAAACGAACAGCATTTTAAAACTTTGAGCGAAGATTATTCCCGTCTTGAAAGAAAGGAACGGCATTTGAAAGCTGCAGTAAGAGGTTTATCTATTGGACTGGCAACTGTGATAGCAATTGCCTTGTTTGTTATAATTTTACTTTTGTACTATCGGAGAATCAAATCTTCAGGCCTCAAAAACCAATCAAGAGCTAATTATCGCGGTCTTTCAAGAAATACAACAATCCCAGAAAGTGGAGCTGTCTACTTGGGGATTCCTGTCTTCTCCTATGAGGAGCTCCAAAAGGCAACAGACAATTTTAATCAAGCTAGAGAACTTGGAGAAGGAGGCTTTGGGACTGTTTACTACGGAAAGCTTGGAGATGGACGTGAAGTTGCAGTGAAGCGCCTATTCGAGCGTAGCTACAGACCAGTAGAATCATTCACAAACGAAATTCAGATCCTCACACGCATGCGCCACAGAAATCTTGTATCCCTTTATGGCTGCACTTCACGCCACAGTCGTGAGTTGCTGTTAGTGTATGAATATATCCCGAACGGCACCGTCAATAGCCATCTCCACAACAAAAAAGAAAACCAAAGCTCATCTTTACCCTGGGCTGTGAGAATGAAAATAGCCATAGAAACTGCTGGTGCATTAACTTATCTCCATGCTTCTGATGTCATTCACCGAGACGTGAAAACCAGCAACATTCTCCTTGACAACAGTTTTTGTGTTAAGGTTGCTGATTTTGGTCTTTCGAGACTGTACCCTAATGATGTCACTCACGTCTCCACAGCGCCTAGAGGAACACCGGGCTATGTTGATCCAGAATACCGGTTATGTTACCAGCTAACAATTGATTTCTCAAGGGATAGAGATGACATTAAGTTGGCAAATCTAGCAATAAGGAAGATTCAGAGAAGGGAATTTTCTGAGTTGATTGATCCTTCTCTTGGTTTTCAGACAGATGAGAATTTAAAAAATGTGATAAGTTGTGTTGCAGAATTGGCCTTCCGGTGTTTGCAAGATGAGAAGGAATTGAGGCCCTCTATGAGTGAAGTATTTGAGGTACTGCAGAAAATTGAAAGTGGCAAAGGTGACGCGGAGAATTATGAGGGGATTGATTTTCATCATGGAATAGGAGTAGCACAAAGTTTTGCACATCCATCACTTACAAACACTTGGATGAAGCCACAGCGCCATCAACAAACACTTTGA 1644 0.4009 MATYFMFRFVLLSSYFLLLLSAASYSEYDKECVIGRNTWCGYLGEFPLLSSFTTVNKRECGFYISGCDNNTSEKKILLKNQMYIVVSMNHMHNSIIIYDPSSSELDLESLFRFAYFPISIFTRSSGCSIAGGLCLSDQEILTINCVSENEQHFKTLSEDYSRLERKERHLKAAVRGLSIGLATVIAIALFVIILLLYYRRIKSSGLKNQSRANYRGLSRNTTIPESGAVYLGIPVFSYEELQKATDNFNQARELGEGGFGTVYYGKLGDGREVAVKRLFERSYRPVESFTNEIQILTRMRHRNLVSLYGCTSRHSRELLLVYEYIPNGTVNSHLHNKKENQSSSLPWAVRMKIAIETAGALTYLHASDVIHRDVKTSNILLDNSFCVKVADFGLSRLYPNDVTHVSTAPRGTPGYVDPEYRLCYQLTIDFSRDRDDIKLANLAIRKIQRREFSELIDPSLGFQTDENLKNVISCVAELAFRCLQDEKELRPSMSEVFEVLQKIESGKGDAENYEGIDFHHGIGVAQSFAHPSLTNTWMKPQRHQQTL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09348 547 Gene3D Phosphorylase Kinase; domain 1 224 324 - -
Vifa1g09348 547 Gene3D Transferase(Phosphotransferase) domain 1 325 425 - -
Vifa1g09348 547 Gene3D Transferase(Phosphotransferase) domain 1 426 513 - -
Vifa1g09348 547 FunFam receptor-like protein kinase FERONIA 212 324 - -
Vifa1g09348 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 369 381 IPR008271 GO:0004672|GO:0006468
Vifa1g09348 547 ProSiteProfiles Protein kinase domain profile. 248 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09348 547 SUPERFAMILY Protein kinase-like (PK-like) 227 503 IPR011009 -
Vifa1g09348 547 ProSitePatterns Protein kinases ATP-binding region signature. 254 276 IPR017441 GO:0005524
Vifa1g09348 547 Pfam Protein kinase domain 249 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09348 547 Coils Coil 146 166 - -
Vifa1g09348 547 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 120 512 IPR044652 GO:0004672
Vifa1g09348 547 Coils Coil 547 547 - -
Vifa1g09348 547 SMART serkin_6 248 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09348 Vifa-Chr1 1476336259 1476338791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09348 176 514 Receptor kinase-like Gene Family AT1G25390 52.893 5.01e-123 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vifa1g09348 Pkinase 6.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09348 - - var:108334729 488.804