Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09347 ATGACTAGCAATTGCCAAACTTCTGCTACTAGTCACAATATCAGGGGTTTAATCTCCAACGCTGGTGCTGGTGCAGCCGCTGGGGCAATAGCTGCTACCTTTGTGTGTCCTTTGGATGTGATCAAGACACGGCTTCAAGTTCATGGCCTTCCCCCTGTGCAGAAAGGTAGTGTCATTGTCACGAGTTTGCAAAATATAGTTAGGACTGAAGGCTTCAGGGGAATGTACCGTGGCCTTTCACCAACAATTCTGGCATTACTTCCAAACTGGGCAGTTTACTTCACATGTTATGAGCAACTAAAGGGCTTGCTTCGGTCACATGAGGGTTGCAACGAACTCACAACTATGGGAAATATTATAGCTGCTGCTGGTGCTGGGGCAGCAACAGCAATATCTACAAACCCATTGTGGGTTGTTAAGACAAGACTCCAAACACAAGGAATGAGGCCTAATGTTGTTCCTTACAAGAGTGTTCTTTCCGCTTTGATGAGGATTACACGGGAGGAAGGTCTACGAGGACTATATAGTGGCATTGTGCCGTCATTAGCTGGCGTAAGTCATGTAGCAATTCAATTCCCAGCATACGAAAAGATAAAGTCATACATTGCCAAAAAAGATAACACAACTGTTGACAACCTTAGTCCTGGGAATGTTGCTATTGCGTCATCAATTTCAAAAGTAACTGCCTCTGTAATGACTTATCCACACGAGGTAATACGTTCCCGGCTGCAAGAGCAAGGTCATGTGAAAAATAGTAATGGATTTCAATATGCCGGGGTTATTGACTGTGCTAAGAAGGTGTTTCAAAAGGAAGGCATTTCAGGATTTTATCGCGGTTGTGCAACTAATCTATTAAGAACAACTCCATCTGCTGTTATTACATTCACCAGTTACGAGATGATACACAGGTTTTTGACGCGGACTATACCACAAAACGAGCCTAAAAAACCCAAACCAGAAGCTGGTGATATTAATACTAAAAATGGCGGTGACAGGGATCAATCACCATCTCAATCTAACAAGATTCCTGTTGGAAACAAAGAGCAGCTAACACGACATTGA 1062 0.4331 MTSNCQTSATSHNIRGLISNAGAGAAAGAIAATFVCPLDVIKTRLQVHGLPPVQKGSVIVTSLQNIVRTEGFRGMYRGLSPTILALLPNWAVYFTCYEQLKGLLRSHEGCNELTTMGNIIAAAGAGAATAISTNPLWVVKTRLQTQGMRPNVVPYKSVLSALMRITREEGLRGLYSGIVPSLAGVSHVAIQFPAYEKIKSYIAKKDNTTVDNLSPGNVAIASSISKVTASVMTYPHEVIRSRLQEQGHVKNSNGFQYAGVIDCAKKVFQKEGISGFYRGCATNLLRTTPSAVITFTSYEMIHRFLTRTIPQNEPKKPKPEAGDINTKNGGDRDQSPSQSNKIPVGNKEQLTRH 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09347 353 Pfam Mitochondrial carrier protein 213 306 IPR018108 -
Vifa1g09347 353 Pfam Mitochondrial carrier protein 18 106 IPR018108 -
Vifa1g09347 353 Pfam Mitochondrial carrier protein 113 205 IPR018108 -
Vifa1g09347 353 Gene3D Mitochondrial carrier domain 110 308 IPR023395 -
Vifa1g09347 353 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 201 IPR018108 -
Vifa1g09347 353 MobiDBLite consensus disorder prediction 313 327 - -
Vifa1g09347 353 MobiDBLite consensus disorder prediction 328 346 - -
Vifa1g09347 353 SUPERFAMILY Mitochondrial carrier 18 300 IPR023395 -
Vifa1g09347 353 MobiDBLite consensus disorder prediction 308 353 - -
Vifa1g09347 353 PRINTS Mitochondrial carrier protein signature 128 146 IPR002067 GO:0055085
Vifa1g09347 353 PRINTS Mitochondrial carrier protein signature 20 33 IPR002067 GO:0055085
Vifa1g09347 353 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Vifa1g09347 353 PRINTS Mitochondrial carrier protein signature 78 98 IPR002067 GO:0055085
Vifa1g09347 353 PRINTS Mitochondrial carrier protein signature 222 244 IPR002067 GO:0055085
Vifa1g09347 353 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 18 310 IPR044712 GO:0006862|GO:0055085
Vifa1g09347 353 FunFam Nicotinamide adenine dinucleotide transporter 2, mitochondrial 17 305 - -
Vifa1g09347 353 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 304 IPR018108 -
Vifa1g09347 353 ProSiteProfiles Solute carrier (Solcar) repeat profile. 15 103 IPR018108 -
Vifa1g09347 353 Gene3D Mitochondrial carrier domain 3 109 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09347 Vifa-Chr1 1476331767 1476334279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09347 33 347 Chloroplast and Mitochondria Gene Families AT1G25380 64.371 3.79e-146 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09347 K15115 - gmx:100797064 541.962