Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09345 ATGACACTACTACTAATTTCTCCTTCCATTCTACCGACAACCATCTTCACATTAATCTTCCACTTCCTCCTCCTCACTCACGCCACAAAAAACCCAGATTTCCACCCATTACTTGCATTCAAAACAGCTACCGACACATCCCACAAACTCACCACATGGAACATCACCAAAGACCTATGCACATGGTACGGTGTTTCTTGCCTCAGAAACCGTGTCTCCCGCCTCGTCCTCGAAAACCTCGAACTCAACGGTTCCATCCAGTCTTTAACCTCTCTCACTCAGCTCCGTGTCCTTAGCCTTAAACGCAACCATTTTAACGGTCCCATTCCAAATCTCTCCAACCTCACTTCATTAAGACTTCTCTTCCTCTCTTACAACAACTTCTCCGGCGAGTTCCCCTCCACCTTAACCTCGCTAACCCGTCTATACCGTCTTGAACTCTCTCACAACAATCTCTCCGGCGAGTTCCCCGTGAATGTCAACAATTTGTCTCGCCTCCTCACTCTCCGCCTAGACGAAAATCAAATCCATGGACACATTCCTAACATAGACCTCTCTTACATCCAAGACTTCAATGTATCAGGTAATAGTCTCTCCGGTCAAATACCCGAATATCTTGCGGGTTTTCCAGATTCTTCCTTCACGCAAAACCCGTCTCTCTGCGGTACACCATTGCAAAAATGTAAAAACCTACCTGCCCTGGCTTCTTCGTTGGTTCCATCTTCTTCTGGTTCAATGCCGGGAAACAAGGCTCATAGATATGGAGGTCCAAGAATGGGGTCTTTGGTCTTAATCGCCATCATACTTGGCGATGTATTGGTACTTGCCATTGTTTCACTGCTTCTCTACTGCTACTTCTGGCGCAACCACTCTAACAAGATGAAGGAAAGAAAGGAAAGAGAAACAAATTCCAAGAGTTTAGATGGTGAAAATCAAAAGATGGTTTATGTTGGGCAACAAGGGTTGGAGAAAGGTAATAAAATGGTGTTTTTTGAAGGAGCAAAGAGGTTTGAGCTTGAGGATTTGCTTCGCGCTTCAGCGGAAATGTTGGGGAAGGGCACGCTTGGCACCGTCTATAAAGCAGTTCTTGATGATGGAAGTGTTGTTGCTGTGAAGAGGTTGAAGGAGGTTCATATTGGAGGGAAGAAAGAGTTCGAGCAGCGAATGGAAGTTATTGGAAGGTTAAGACACACCAACACTGTTACCTTGAAGGCTTATTATTTTGCAAGGGATGAAAAATTGCTTGTCTTTGATTACATGGTTAATGGTAGCTTGTTCTGGCTCCTTCATGGTAACCGAGGACCCGGGCGAACCCCACTGGCCTGGACCACAAGGATAAAGATAGCAGCTGAAGCGGCACAAGGTGTGGCATTCATACACAACCATAACAATAATAATAATAATCTAACCCACGGTAACATCAAATCCACCAACATCCTCGTTGACGTGTCTGGAACCGCACGCGTGGTTGATTTTGGACTCTCCATTTTCACCCTCCCATCAACCAGAAGATCCAACGGTTACCGTGCGCCAGAAGCATTAGACGGTCGAAAACAGTCTCAGAAATCTGACGTGTACGCCTTCGGCGTTCTGTTAATGGAGATACTAACAGGGAAGTGTCCCTCCGCTGCGGATGGTGGAGCAGAGGTGGAGTTACCAAAGTGGGTCCAGTCTGTGGTGAGGGAGGAATGGACGGCGGAGGTGTTTGATCTTGAGCTGATGAGGTATAAGGATGCTGAGGAGGAGATGGTGGCGTTGCTGCAGATTGCTTTGACGTGTACTGCGGCTGCACCTGATCAACGGCCCAAGATGAGCCACGTGGTCAAGAAGATTGAGGAGTTGCGTGGGGTCGTTGTATCTCCGTGTCATGACACGTTGGGCTCTGTTTCTGAGTCACCTTCAGTGTCTGAAGATGCATGTGGTGGGGCTACTCACTAA 1938 0.4721 MTLLLISPSILPTTIFTLIFHFLLLTHATKNPDFHPLLAFKTATDTSHKLTTWNITKDLCTWYGVSCLRNRVSRLVLENLELNGSIQSLTSLTQLRVLSLKRNHFNGPIPNLSNLTSLRLLFLSYNNFSGEFPSTLTSLTRLYRLELSHNNLSGEFPVNVNNLSRLLTLRLDENQIHGHIPNIDLSYIQDFNVSGNSLSGQIPEYLAGFPDSSFTQNPSLCGTPLQKCKNLPALASSLVPSSSGSMPGNKAHRYGGPRMGSLVLIAIILGDVLVLAIVSLLLYCYFWRNHSNKMKERKERETNSKSLDGENQKMVYVGQQGLEKGNKMVFFEGAKRFELEDLLRASAEMLGKGTLGTVYKAVLDDGSVVAVKRLKEVHIGGKKEFEQRMEVIGRLRHTNTVTLKAYYFARDEKLLVFDYMVNGSLFWLLHGNRGPGRTPLAWTTRIKIAAEAAQGVAFIHNHNNNNNNLTHGNIKSTNILVDVSGTARVVDFGLSIFTLPSTRRSNGYRAPEALDGRKQSQKSDVYAFGVLLMEILTGKCPSAADGGAEVELPKWVQSVVREEWTAEVFDLELMRYKDAEEEMVALLQIALTCTAAAPDQRPKMSHVVKKIEELRGVVVSPCHDTLGSVSESPSVSEDACGGATH 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09345 645 Gene3D Ribonuclease Inhibitor 116 228 IPR032675 -
Vifa1g09345 645 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Vifa1g09345 645 Gene3D Phosphorylase Kinase; domain 1 313 419 - -
Vifa1g09345 645 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 21 615 IPR046959 -
Vifa1g09345 645 FunFam pollen receptor-like kinase 1 315 419 - -
Vifa1g09345 645 ProSiteProfiles Protein kinase domain profile. 344 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09345 645 SUPERFAMILY L domain-like 50 223 - -
Vifa1g09345 645 Gene3D Transferase(Phosphotransferase) domain 1 420 620 - -
Vifa1g09345 645 MobiDBLite consensus disorder prediction 626 645 - -
Vifa1g09345 645 Gene3D Ribonuclease Inhibitor 26 115 IPR032675 -
Vifa1g09345 645 FunFam Nuclear pore complex protein NUP107 30 182 - -
Vifa1g09345 645 Pfam Protein kinase domain 348 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09345 645 SUPERFAMILY Protein kinase-like (PK-like) 348 610 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09345 Vifa-Chr1 1475937750 1475940737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09345 33 644 Receptor kinase-like Gene Family AT1G68400 61.832 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa1g09345 Pkinase 6.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09345 - - cam:105851082 819.305