Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09335 ATGCCGCCACAGGGTAATGCCGCTGCAGCCGCGGCTATCTATGATCATGCTGCCGGCGGCTCCCTGCAAAGTTCATCCACTGATGCTGGAGACGCCGTTATGGCGCGGTGGCTTCAGTCTGCCGGCTTGCAGCATCTCGGCTCTCCATTTGCCTCGTCCGGCATTGATCATCGCCTCTTCCCCAACCTTCTAATGCAGGGTTATGGAGCACAGTCTACTGAAGAGAAGCAGAGGCTTTTGAAGTTAATGAGAAACCTCAATTTTAATGGAGAATCTGGTTCGGAGCTGTATATGCCCAACACTCAAACTTTGGGTGGAGTCGCAGCATCAGATGGGTTTTTTTCACCTGAGTTCAGAGGTGATTTTGGAGCTGGGCTTTTGGATCTTCATGCCATGGATGACACAGGGCTTTTGTCTGAGCATATGATTTCTGAACCTTTCGAACCATCACCCATCATACCCGGAGATACTAGAGCATTTGAAGATGATTTCTATCCAACTAACAGCAAGCTTGAAAAAGAAGCAGATGTTGACGCATCAATCAATTTACCTGTGAATGAAAAAGAGAATAGCACAAGGGAGAATAATGTCGCCAAAATTAAAGTCGTGGTACGTAAAAGGCCTTTAAACAAGAAAGAGCTTGCTAAAAGAGAGGATGATGCTGTAACTGTATCTGACAATGCTTATTTGACAGTCTATGAACCTAAACTAAAGGTTGATCTGACAGCTTATGTGGACAAGCATGAGTTTTGTTTTGATGCCGTTCTTGATGAGCATGTTACTAATGATGAAGTATACCGAGCTACAGTTGAACCAATTATTCCTACAATTTTTGAACGAACCAAAGCTACCTGTTTTGCTTACGGCCAGACAGGAAGTGGCAAAACATACACAATGCAACCTTTACCGCTCAGAGCTGCAGAAGACCTTGTTCGACAGTTGCATCAGCCAGTTTACCTGAGTCAGAAATATAAATTGTGGCTTAGCTACTTTGAGATATATGGTGGAAAGCTATTTGATCTTCTTAGTGACAGAAGAAAACTTTGCATGAGGGAAGATGGACGGCAGCAAGTTTGTATTGTAGGATTGCAAGAATTTGAAGTTTTTGATGTTCAAATTGTCAAAGACTTCATTGAAAAGGGAAATGCTTCAAGAAGTACAGGATCCACGGGTGCTAACGAGGAGTCCTCCAGGTCGCATGCTATCTTACAATTGGTTGTAAAGACGCACAATGAGGTGAAAGCAGGCAAGCGAAACACTGATGGAAATGAGGCAAAAAGTGGGAAGGTTGTGGGGAAGATATCTTTTATTGATCTTGCTGGAAGTGAAAGAGGTGCTGACACTACTGATAATGATCGTCAAACACGGATAGAAGGAGCTGAAATCAACAAGAGCCTTTTAGCTTTAAAGGAATGCATTCGTGCTTTAGACAATGACCAAATCCATATTCCATTCCGAGGAAGCAAACTTACAGAAGTGCTGCGGGACTCTTTTGTAGGCAACTCAAAAACTGTTATGATCTCTTGTATATCTCCAGGTGCTGGATCTTGTGAACACACGCTTAACACCCTGAGATATGCTGATCGGGTTAAAAGTCTTTCCAAAAGTGGAAATCCTAGAAAAGACCCGATCCCCAATTGTGCACCTCAAACTAATAAGGACGTTTCATCTACATCAACCCTTCCAGCTAGTGACCGTACAGAGGATTTTAGTAATCAATGCCTAGAGAAACCAATGGACTTGGGCAGGAAACCATTTGAAATGGAGAATACTATGTATAGTTCTGCTGCCATTGCTGACAAACAGATACCTAGTATTTCTTCAAATTACCTATCAAATGGGCGAGAAGAAAAAGGCATTACTTCTAGTATTTCTTCAAATTACCTATCAAATGGGCGAGAAGAAAAAGGCATTACTTCTGCTTCAATGGAGAGAAAAGGTTCTAAAGATGAAAGGTCCGAAAGGCCTACAAACTTGATGAAAAGGGATATCAATGGATCCGATCCCTCGACTACATGCTCCAAGCAGCAGACCACAGGGAATCACAACACTGTTACCACCGGATCTAGGCTTTATGTAGCAGAATCCACTCCTGATGGAAATATCGATGCAGTACTTGAGGAGGAAGAAGCACTAATTGCGGCTCATAGGAAAGAAATTGAGGACACAATGGAGATTGTACGCGATGAAATGAATCTCTTGGCAGAAGTGGACCAACCAGGAAGCCGTATGGACAACTATGTAGCCCAATTGAATTATGTGCTTTCTCGCAAAGCAGCTAGTCTTGTGGGTCTCCAAGCTCGCCTTGCAAGATTCCAACATCGACTAAAAGAGCAGGAGATTCTAAGTAGAAAAAGAGTCTCCCGTCAATAA 2373 0.4307 MPPQGNAAAAAAIYDHAAGGSLQSSSTDAGDAVMARWLQSAGLQHLGSPFASSGIDHRLFPNLLMQGYGAQSTEEKQRLLKLMRNLNFNGESGSELYMPNTQTLGGVAASDGFFSPEFRGDFGAGLLDLHAMDDTGLLSEHMISEPFEPSPIIPGDTRAFEDDFYPTNSKLEKEADVDASINLPVNEKENSTRENNVAKIKVVVRKRPLNKKELAKREDDAVTVSDNAYLTVYEPKLKVDLTAYVDKHEFCFDAVLDEHVTNDEVYRATVEPIIPTIFERTKATCFAYGQTGSGKTYTMQPLPLRAAEDLVRQLHQPVYLSQKYKLWLSYFEIYGGKLFDLLSDRRKLCMREDGRQQVCIVGLQEFEVFDVQIVKDFIEKGNASRSTGSTGANEESSRSHAILQLVVKTHNEVKAGKRNTDGNEAKSGKVVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPGAGSCEHTLNTLRYADRVKSLSKSGNPRKDPIPNCAPQTNKDVSSTSTLPASDRTEDFSNQCLEKPMDLGRKPFEMENTMYSSAAIADKQIPSISSNYLSNGREEKGITSSISSNYLSNGREEKGITSASMERKGSKDERSERPTNLMKRDINGSDPSTTCSKQQTTGNHNTVTTGSRLYVAESTPDGNIDAVLEEEEALIAAHRKEIEDTMEIVRDEMNLLAEVDQPGSRMDNYVAQLNYVLSRKAASLVGLQARLARFQHRLKEQEILSRKRVSRQ 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09335 790 PANTHER KINESIN-RELATED PROTEIN 6 27 787 IPR027640 GO:0003777|GO:0007018
Vifa1g09335 790 MobiDBLite consensus disorder prediction 622 686 - -
Vifa1g09335 790 MobiDBLite consensus disorder prediction 622 637 - -
Vifa1g09335 790 MobiDBLite consensus disorder prediction 663 686 - -
Vifa1g09335 790 MobiDBLite consensus disorder prediction 549 569 - -
Vifa1g09335 790 ProSitePatterns Kinesin motor domain signature. 432 443 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vifa1g09335 790 MobiDBLite consensus disorder prediction 638 661 - -
Vifa1g09335 790 Pfam Kinesin motor domain 205 532 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g09335 790 CDD KISc_KIF2_like 199 531 - -
Vifa1g09335 790 Coils Coil 706 726 - -
Vifa1g09335 790 Gene3D Kinesin motor domain 176 536 IPR036961 -
Vifa1g09335 790 FunFam Kinesin-like protein 178 536 - -
Vifa1g09335 790 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 533 IPR027417 -
Vifa1g09335 790 SMART kinesin_4 197 539 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g09335 790 PRINTS Kinesin heavy chain signature 433 451 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g09335 790 PRINTS Kinesin heavy chain signature 483 504 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g09335 790 PRINTS Kinesin heavy chain signature 280 301 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g09335 790 PRINTS Kinesin heavy chain signature 390 407 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g09335 790 MobiDBLite consensus disorder prediction 533 581 - -
Vifa1g09335 790 Coils Coil 762 782 - -
Vifa1g09335 790 ProSiteProfiles Kinesin motor domain profile. 199 533 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09335 Vifa-Chr1 1474716801 1474724386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09335 191 533 Calmodulin-binding Proteins AT5G65930 33.427 7.47e-41 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09335 K10393 - gmx:100778915 1171.38