Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09333 ATGTCAGCGGGTTGGGTGTTGTCATTTTTAGCTGGGGACTATTGGCTTGCAATTGCAACTTCAGATGATTCTGGCATTCTTTCATTTACTTTCATTTTCGTCTATGCTGCTATAGCTGTTGTTGCATGCATAGTTCTTATAGGAAGAGCTTTCATGTATACATATTTGGGTCTAAAGACATCTCAAAGCTTCTTCATTGGAATGCTTCAAAGTATCCTTCATGCACCAATGTCATTCTTTGATACTACTCCTTCTGGCAGAATTTTGAGTCGTGCATCTACTGATATACTTTGGGTGGATATAACGATTCCAATGTTTACAAACTTTGTAATGATTGCATACTTATCATTATTCAGTATCCTCATTGTCACATGCCAGAACTCTTGGGTGACTGTCTTTCTCGTAATTCCACTGGTCTGGCTCTACAACTGGTATAGGAAATATTATCTTGCAACTTCTAGGGAATTGACTCGTCTTGATTCAATCACAAAAGCTCCAGTGATTCATCACTTTTCAGAGACACTTTCCGGTGTTATGACAATCCGTAGCTTAAGAAAGCAGAATGAATTTTGTGATGAAAATATTGACAGGGTGAATGCAAGTCTAAGAATGGATTTCCATAACAACGGAGCAAATGAATGGCTTGGTTTTCGCTTGGACTATATGGGAGTGGTTTTCCTTTGTACTGCCACTTCTTTTATGATCTTTTTTCCAAGTACTATTGTTAAACCAGAATATGTTGGTATGTCTCTATCCTATGGTCTGTCTCTGAGTGGTCTTTTGTCATTTGCCATAACTATGAGTTGCAATGTTGAGAACAAAATGGTTTCAGTTGAAAGGATAAAACAGTTTACTAACCTCCCACCAGAAGCTCCATGGAAAATAGCTGACAAGTCTGTTCCTCAAAATTGGCCTAGTCATGGAACTATAGAGTTAAATAATTTACAGGTTAGGTACAGGCCAAATACTCCTCTAGTTCTTAAGGGAGTCTCTCTAACCATTCAAGGTGGAGAAAAAGTTGGCGTTGTTGGGCGTACAGGAAGTGGAAAATCAACACTCATTCAAGTTTTATTTAGGTTGATTGAGCCTTCTGCCGGAAATATAATCATTGATGGTATCGATATTTCGACTGTTGGCCTTCATGATTTGAGGTCACGTTTTGGAATTATTCCACAAGATCCCGTCCTCTTTCAAGGGACAGTAAGAACCAACATTGACCCTCTTGGATTGTATTCTGAAGATGAAATTTGGAAGAGTCTTGAGCGGTGCCAATTGAAAGAAGTGGTGGCTGCAAAGCCCGAGAAACTTGAGGCTTTAGTGGTTGACGGTGGAGACAATTGGAGTGTTGGACAAAGGCAGCTTCTATGTTTGGGAAGGATAATGCTAAAACGCAGCAAAATATTATTCATGGATGAAGCAACAGCATCGGTTGATTCACAAACAGATGTTGTAATACAAAAGATCATCAGAGTGGATTTTGCAGATCGTACAATAATTAGCATTGCTCACAGAATACCAACAGTTATGGATTGTGACAAGGTTTTGGTCATAGATGCAGGTTTGGCAAAGGAGTACGAGAAACCATCACATTTGGTTGAAAGGGCATCACTTTTTGGTGCATTGGTTAAAGAGTATTCCAATAGATCAACTTAG 1653 0.3914 MSAGWVLSFLAGDYWLAIATSDDSGILSFTFIFVYAAIAVVACIVLIGRAFMYTYLGLKTSQSFFIGMLQSILHAPMSFFDTTPSGRILSRASTDILWVDITIPMFTNFVMIAYLSLFSILIVTCQNSWVTVFLVIPLVWLYNWYRKYYLATSRELTRLDSITKAPVIHHFSETLSGVMTIRSLRKQNEFCDENIDRVNASLRMDFHNNGANEWLGFRLDYMGVVFLCTATSFMIFFPSTIVKPEYVGMSLSYGLSLSGLLSFAITMSCNVENKMVSVERIKQFTNLPPEAPWKIADKSVPQNWPSHGTIELNNLQVRYRPNTPLVLKGVSLTIQGGEKVGVVGRTGSGKSTLIQVLFRLIEPSAGNIIIDGIDISTVGLHDLRSRFGIIPQDPVLFQGTVRTNIDPLGLYSEDEIWKSLERCQLKEVVAAKPEKLEALVVDGGDNWSVGQRQLLCLGRIMLKRSKILFMDEATASVDSQTDVVIQKIIRVDFADRTIISIAHRIPTVMDCDKVLVIDAGLAKEYEKPSHLVERASLFGALVKEYSNRST 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09333 550 Pfam ABC transporter 327 475 IPR003439 GO:0005524
Vifa1g09333 550 SUPERFAMILY ABC transporter transmembrane region 24 292 IPR036640 GO:0005524|GO:0016020
Vifa1g09333 550 CDD ABCC_MRP_domain2 308 528 - -
Vifa1g09333 550 SMART AAA_5 336 521 IPR003593 GO:0016887
Vifa1g09333 550 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 7 546 - -
Vifa1g09333 550 FunFam ABC transporter C family member 3 293 544 - -
Vifa1g09333 550 CDD ABC_6TM_ABCC_D2 3 285 IPR044726 GO:0140359
Vifa1g09333 550 Gene3D - 294 542 IPR027417 -
Vifa1g09333 550 FunFam ABC transporter C family member 5 1 291 - -
Vifa1g09333 550 Gene3D ABC transporter type 1, transmembrane domain 1 291 IPR036640 GO:0005524|GO:0016020
Vifa1g09333 550 Pfam ABC transporter transmembrane region 30 232 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g09333 550 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 310 544 IPR003439 GO:0005524
Vifa1g09333 550 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 273 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g09333 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 543 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09333 Vifa-Chr1 1473380587 1473383024 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09333 308 543 Calmodulin-binding Proteins AT2G36910 30.992 9.97e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09333 - K05665 gmx:100780167 901.738