Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09332 ATGTCGTCTTCTTCTTCATGGCTTACTTCTCCTTCATGCACTCTTTTTCCTATAGATTCATCTTCCTCTACACCAAACCCCATTCTTCAATGGTTAACCTTTCTTTTTCTATCTCCATGTCCTCAAAGACTTGTTCTTTCTGCTCTTGATTTCTTGTTTTTGCTCTCTCTCTTGGCTTTAGCAGCTCACAAACTCTATTCAACTTCCAACTCTACCTCCTCGATCACAAAACCACTTCTGCAGGAGAAAGATTCTGACTATAGAATCACCTTTTGGTTCAAACTACCCTTGTTGGTTACTACCCTTTTGGCTATAACTTACACTGTTCTAGGAGTCTTGGCTTTTACGCAAACCAATAATGTTACTTCATGGAAACAAATAGAAGCGCTTTTTCGGTTGTTTCAAGCAATAGTCAACATAGTGATACTGATTCTAATGATACATGAGAAAAAGTTCAAATCTTTCAAACACCCTTTATCATTAAGAATCTATTGGGTAGCAAACTTTGTGATTGCTACTTTGTTTGCTGCTTCCGCTATTGTTCGAATTGTAACTGTAAGCGAAGAAAAAATGGAACTTAGTTTGAGAATAGATGACATATTCTCACTGGTAAATCTTCCATTATCTGTGTTCTTTTTTGTGATATCCATAAAAGGGTCATCAGGGATTCATGTCATAAGAATATCTGATGAAGTAGCAATATATCCATCGATTTCTAGGGATAGAACTTTGAGTCCTTATGCTTGTTCTTCATTTTTGTCCAAATCAGTTTGGTTTTGGATAATCCCTTTGCTTAATAAAGGTTACAAAACACCCCTTAACCTAGAAGATGTTCCTTCACTTCCTCTTGAGTTTAGAGCAGAAAAAATCTCTGAACTTTTTCAAAACAATTGGCCAAAACCAGATGAAAACACAAAATCGGTTGAAGTACTTAGTGTCCATCACTACAACTTCCACTCTCAGAAACTCGGTATGCTTATTCGTTCGAGCATAATCACTTCGGTTTACAAAAAGGGTTTAAGGTTGTCAAGTTCTTCAAGACAAACTCATGGAACGGGACAGATTGTGAATCACATGGCTGTCGACGCTCAACAACTCTCAGATATGATGATGCAGTTTCATCCTATATGGTTGATGCCCTTGCAAGTTACTGCTGCACTGGCTCTTATATATAGCTATATTGGAGTATCTGCTCTTGCTGCATTTCTTGGAACTGCCGTAGTTTTTCTTTTCACAACTTATCGAACTAAGAGTAGTAATAGTTTCCAGGTTCAGATAATGAAAAGCCGCGATTTGAGACTGAAGGCGACGAGTGAATTGCTTAACAATATGCGTGTGATTAAATTTCAAGCGTGGGAAGAGTATTTCGGTAACAAAATTCAAGAGTTTCGTGAAGCCGAGCATGGATGGATTGGGAAATTCTTATACAATTTTGCTGTTAACTTTGGAGTATTGTCTGCTGCAACATTAGTTGTAACTGTTCTTACCTTTGGAACTGCAACTTTTATTGGAATTCGTTTGAATCCTGGCACTTTTTTCCCAATAATTTCGATTATCAAGATACTTCAAGAGCCTTTGAGGACTTTTCCTCAGGCTCTTATGATGGTTTCTCAAGCAACAATATCTTTAGGGAGGTTGGATGAGTTCATGACGAGCGAGGAAATGGATGAGAATGCAGTGCAAAAAGAACAGAACTGTGACGATGATGTAGCAGTGGAGATAAAAGATGGGAAATTCTCATGGGATGATAACGATGAGAATGATGGTTTGAGAGTTGATGAGTTGGAAATTAAGAAAGGGAAAGGGAATCATGCTGCTGTTGTAGGAACTGTTGGTTCAGGCAAGTCTTCATTATTGGCTTCTTTGTTGGGAGAAATGTTCAAGATCTCAGGAAAGGTTAGAGTTTGTGGGACAACGGCGTATGTAGCACAAACATCATGGATTCAGAATGCAACCATCAAAGAAAACATATTGTTTGGTTTACCAATGAACATGGACAAGTACATGGAAGCTTTAAGAGTGTGCTGTCTTGAGAAGGATCTTGAAATGATGGAATATGGTGATGAGACCGAGATTGGAGAGCGCGGAATAAACCTCAGCGGAGGTCAGAAACAACGCATACAGCTTGCTAGAGCTGTATATCAGGACACTGACATCTATCTCCTTGATGATGTATTCAGTGCTGTTGATGCTCAAACAGGATCTTTTATTTTTAAGGAATGTATTATGGGAACTCTCAAAGATAAGACAGTTTTACTTGTAACCCACCAAGTTGATTTCTTGCATAATGTTGACTCTATAATGGTAATGCGTGAAGGGAGAGTAGTGCAAAGTGGAAAGTATGACGAACTTCTCAAAGCAGGCCTAGATTTTGGTGCACTTGTGGCAGCTCATGAATCCTCAATGGAAATAGAAGAAACAGGTGACAAGACTAGTGATGATTCAGCTCAAACTCCAAAACTTGCTCGCATTGCATTGAAAGAAAAAGAAAGTGGCGGTGAAAAGCAGTTTTCTCAAGATCAATCTAATAAAACTGCAGCAAAGCTCATTGAAGATGAGGGAAGAGAAATCTGGACATGTGAGCCTTAA 2589 0.3862 MSSSSSWLTSPSCTLFPIDSSSSTPNPILQWLTFLFLSPCPQRLVLSALDFLFLLSLLALAAHKLYSTSNSTSSITKPLLQEKDSDYRITFWFKLPLLVTTLLAITYTVLGVLAFTQTNNVTSWKQIEALFRLFQAIVNIVILILMIHEKKFKSFKHPLSLRIYWVANFVIATLFAASAIVRIVTVSEEKMELSLRIDDIFSLVNLPLSVFFFVISIKGSSGIHVIRISDEVAIYPSISRDRTLSPYACSSFLSKSVWFWIIPLLNKGYKTPLNLEDVPSLPLEFRAEKISELFQNNWPKPDENTKSVEVLSVHHYNFHSQKLGMLIRSSIITSVYKKGLRLSSSSRQTHGTGQIVNHMAVDAQQLSDMMMQFHPIWLMPLQVTAALALIYSYIGVSALAAFLGTAVVFLFTTYRTKSSNSFQVQIMKSRDLRLKATSELLNNMRVIKFQAWEEYFGNKIQEFREAEHGWIGKFLYNFAVNFGVLSAATLVVTVLTFGTATFIGIRLNPGTFFPIISIIKILQEPLRTFPQALMMVSQATISLGRLDEFMTSEEMDENAVQKEQNCDDDVAVEIKDGKFSWDDNDENDGLRVDELEIKKGKGNHAAVVGTVGSGKSSLLASLLGEMFKISGKVRVCGTTAYVAQTSWIQNATIKENILFGLPMNMDKYMEALRVCCLEKDLEMMEYGDETEIGERGINLSGGQKQRIQLARAVYQDTDIYLLDDVFSAVDAQTGSFIFKECIMGTLKDKTVLLVTHQVDFLHNVDSIMVMREGRVVQSGKYDELLKAGLDFGALVAAHESSMEIEETGDKTSDDSAQTPKLARIALKEKESGGEKQFSQDQSNKTAAKLIEDEGREIWTCEP 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09332 862 Gene3D ABC transporter type 1, transmembrane domain 307 555 IPR036640 GO:0005524|GO:0016020
Vifa1g09332 862 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 306 855 - -
Vifa1g09332 862 SUPERFAMILY ABC transporter transmembrane region 311 554 IPR036640 GO:0005524|GO:0016020
Vifa1g09332 862 SMART AAA_5 601 782 IPR003593 GO:0016887
Vifa1g09332 862 FunFam ABC transporter C family member 10 304 554 - -
Vifa1g09332 862 Pfam ABC transporter transmembrane region 310 526 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g09332 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 570 793 IPR027417 -
Vifa1g09332 862 Gene3D - 566 800 IPR027417 -
Vifa1g09332 862 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 572 797 IPR003439 GO:0005524
Vifa1g09332 862 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 308 538 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g09332 862 CDD ABC_6TM_ABCC_D1 308 546 IPR044746 GO:0140359
Vifa1g09332 862 FunFam ABC transporter C family member 5 557 806 - -
Vifa1g09332 862 Pfam ABC transporter 595 725 IPR003439 GO:0005524
Vifa1g09332 862 CDD ABCC_MRP_domain1 572 774 - -
Vifa1g09332 862 ProSitePatterns ABC transporters family signature. 699 713 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09332 Vifa-Chr1 1473377309 1473380525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09332 572 802 Calmodulin-binding Proteins AT2G36910 31.746 4.06e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09332 - K05665 gmx:100780167 850.121