Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09328 ATGATATTAGGGAATCTCATTGCTATTACCCAAACAAGCATGAAACGTATGCTTGCCTATTCGTCCATAGGTCAAATCGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCAAGCATGATAACTTATATGCTGTTCTATATCTCCATGAATATAGGAACTTTTGCTTGCATTGTGTTATTTGGTCTACGTACCGGAACTGATAACATTCGAGATTATGCAGGATTATACACGAAAGATCCTTTTTTGGCTCTCTCTTTAGCCCTATGTCTCTTATCCTTAGGAGGTCTTCCTCCACTAGCAGGAGTGTTTATGTCACGTTACAGAGGGCCTCGTTTGAAAAAAATACGCCGTCTGGGGGCTTTACCAGGACTAACCAGTAAACAGCTTCCAGTTGGAAGCGAACAATCGCGCTCCAGTGAAAAAAGGGAAAAAAGGGAAAAAAGGGAAAAATCTTACTATTCTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTCCAGAACGCCAATTGCTGAAATATGTTCGTATCGCTGGAAAAGCGAAAGGGTCAACCGGTCAAGTTTTACTTCAATTACTTGAAATGCGTTTGGATAACATACTTTTTCGATTGGGTATGGCTGTGACTATTCCTCAAGCCCGTCAATTAGTTAACCACAGACATGTTTTAGTTAATGGTCGTATAGTAAATATACCAAGTTATCGTTGTAAACCTGAAGATATTATTACAGCCAAGGATGAACAAAAATCTAGAACTCTGATTCAAAATTCTCTTCAATCAGCCCCCCGCGAAAAATTGCCAACCCATTTGACTCTTGATCCATCCCAATATAAAGGATTAGTCAATCAAATAATAGATAGTCAATGGGTTGGTTTGAAAATTAAGGAATTGCTGGTTGTAGAATATTATTCTCGTCAGACTAAAACCTAG 957 0.3783 MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYISMNIGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGVFMSRYRGPRLKKIRRLGALPGLTSKQLPVGSEQSRSSEKREKREKREKSYYSIRLEEKQKLRFHYGLPERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAVTIPQARQLVNHRHVLVNGRIVNIPSYRCKPEDIITAKDEQKSRTLIQNSLQSAPREKLPTHLTLDPSQYKGLVNQIIDSQWVGLKIKELLVVEYYSRQTKT 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09328 318 Hamap 30S ribosomal protein S4 [rpsD]. 110 314 IPR005709 GO:0003735|GO:0006412|GO:0015935
Vifa1g09328 318 PANTHER NADH DEHYDROGENASE 1 110 - -
Vifa1g09328 318 MobiDBLite consensus disorder prediction 142 156 - -
Vifa1g09328 318 SUPERFAMILY Alpha-L RNA-binding motif 112 314 - -
Vifa1g09328 318 CDD S4 204 263 - -
Vifa1g09328 318 Pfam Proton-conducting membrane transporter 1 110 IPR001750 -
Vifa1g09328 318 Pfam S4 domain 204 251 IPR002942 GO:0003723
Vifa1g09328 318 SMART s4_6 204 268 IPR002942 GO:0003723
Vifa1g09328 318 Gene3D - 203 299 IPR036986 GO:0003723
Vifa1g09328 318 SMART Ribosomal_S4_2 112 203 IPR001912 GO:0019843
Vifa1g09328 318 FunFam 30S ribosomal protein S4, chloroplastic 203 299 - -
Vifa1g09328 318 ProSiteProfiles S4 RNA-binding domain profile. 204 267 - -
Vifa1g09328 318 ProSitePatterns Ribosomal protein S4 signature. 202 226 IPR018079 GO:0019843
Vifa1g09328 318 Gene3D Ribosomal Protein S4 Delta 41; Chain A, domain 1 112 314 - -
Vifa1g09328 318 Pfam Ribosomal protein S4/S9 N-terminal domain 112 203 IPR001912 GO:0019843
Vifa1g09328 318 NCBIfam 30S ribosomal protein S4 112 314 IPR005709 GO:0003735|GO:0006412|GO:0015935
Vifa1g09328 318 FunFam 30S ribosomal protein S4, chloroplastic 112 212 - -
Vifa1g09328 318 MobiDBLite consensus disorder prediction 132 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09328 Vifa-Chr1 1473301799 1473305243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09328 200 248 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 44.898 1.38e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09328 K02986 - cave:30215214 323.553